Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14h17
(621 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY113486-1|AAM29491.1| 294|Drosophila melanogaster RE45450p pro... 242 2e-64
AE014296-1910|AAF50091.1| 294|Drosophila melanogaster CG7636-PA... 242 2e-64
AY128449-1|AAM75042.1| 506|Drosophila melanogaster LD43863p pro... 31 1.7
AE014134-1246|AAF52491.1| 506|Drosophila melanogaster CG4497-PA... 31 1.7
BT022775-1|AAY55191.1| 636|Drosophila melanogaster IP13956p pro... 29 5.1
BT022767-1|AAY55183.1| 636|Drosophila melanogaster IP13856p pro... 29 5.1
AE014296-3276|AAF49071.1| 636|Drosophila melanogaster CG7385-PA... 29 5.1
BT021941-1|AAX51646.1| 362|Drosophila melanogaster RE18811p pro... 28 8.9
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 28 8.9
AE014298-1940|AAF48302.1| 362|Drosophila melanogaster CG12177-P... 28 8.9
>AY113486-1|AAM29491.1| 294|Drosophila melanogaster RE45450p
protein.
Length = 294
Score = 242 bits (593), Expect = 2e-64
Identities = 114/174 (65%), Positives = 137/174 (78%)
Frame = -2
Query: 554 VXQIIEDGCRTAHVALVAVGDKLKYSLATENMKAGDIIKTSCKLPRIPVRANEGDAYVLG 375
V +++ DGCRTA VALVAVGD+LKY LATENMKAGDI+KTS +PRIPVR NEGDAY LG
Sbjct: 108 VLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPRIPVRPNEGDAYPLG 167
Query: 374 ALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSKRLFSFNQLCMAVVG 195
ALP+GT +HC+EK PGQ IHAAGT GTI+RK D++V+VQ+PSKR F+F + CMA VG
Sbjct: 168 ALPVGTRIHCLEKNPGQMCHLIHAAGTFGTILRKFDEKVVVQLPSKREFAFQRTCMATVG 227
Query: 194 RLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPS 33
RLSN H +GS QR R +GNRPRSGLW+RK G+HGRKI+ P+ I P+
Sbjct: 228 RLSNPEHNKEHVGSAQRMREMGNRPRSGLWKRKEGKHGRKIRRLTPMTTISPPA 281
>AE014296-1910|AAF50091.1| 294|Drosophila melanogaster CG7636-PA
protein.
Length = 294
Score = 242 bits (593), Expect = 2e-64
Identities = 114/174 (65%), Positives = 137/174 (78%)
Frame = -2
Query: 554 VXQIIEDGCRTAHVALVAVGDKLKYSLATENMKAGDIIKTSCKLPRIPVRANEGDAYVLG 375
V +++ DGCRTA VALVAVGD+LKY LATENMKAGDI+KTS +PRIPVR NEGDAY LG
Sbjct: 108 VLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPRIPVRPNEGDAYPLG 167
Query: 374 ALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSKRLFSFNQLCMAVVG 195
ALP+GT +HC+EK PGQ IHAAGT GTI+RK D++V+VQ+PSKR F+F + CMA VG
Sbjct: 168 ALPVGTRIHCLEKNPGQMCHLIHAAGTFGTILRKFDEKVVVQLPSKREFAFQRTCMATVG 227
Query: 194 RLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPS 33
RLSN H +GS QR R +GNRPRSGLW+RK G+HGRKI+ P+ I P+
Sbjct: 228 RLSNPEHNKEHVGSAQRMREMGNRPRSGLWKRKEGKHGRKIRRLPPMTTISPPA 281
>AY128449-1|AAM75042.1| 506|Drosophila melanogaster LD43863p
protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -1
Query: 159 RVPTAEQVAREPASLRSVAAEVWSSRKKDQTPKTCQ--TNLQSERAPN 22
R P A + + P + R+ AA ++++ +QTPK Q ++Q AP+
Sbjct: 47 RTPPAGKSGKTPMTTRAAAAAALAAKEHEQTPKKSQQVVDIQMPNAPS 94
>AE014134-1246|AAF52491.1| 506|Drosophila melanogaster CG4497-PA
protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -1
Query: 159 RVPTAEQVAREPASLRSVAAEVWSSRKKDQTPKTCQ--TNLQSERAPN 22
R P A + + P + R+ AA ++++ +QTPK Q ++Q AP+
Sbjct: 47 RTPPAGKSGKTPMTTRAAAAAALAAKEHEQTPKKSQQVVDIQMPNAPS 94
>BT022775-1|AAY55191.1| 636|Drosophila melanogaster IP13956p
protein.
Length = 636
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -2
Query: 173 GSTPIG-SPQRNRWLGN--RPRSGLWQRK-SGRHGRKIKPPKPVKQICNPSEH 27
G TP G S +RWL R SG Q + HG+ + PP P + I N H
Sbjct: 515 GRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTHGQNVTPPPPYQSIFNGGSH 567
>BT022767-1|AAY55183.1| 636|Drosophila melanogaster IP13856p
protein.
Length = 636
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -2
Query: 173 GSTPIG-SPQRNRWLGN--RPRSGLWQRK-SGRHGRKIKPPKPVKQICNPSEH 27
G TP G S +RWL R SG Q + HG+ + PP P + I N H
Sbjct: 515 GRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTHGQNVTPPPPYQSIFNGGSH 567
>AE014296-3276|AAF49071.1| 636|Drosophila melanogaster CG7385-PA
protein.
Length = 636
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -2
Query: 173 GSTPIG-SPQRNRWLGN--RPRSGLWQRK-SGRHGRKIKPPKPVKQICNPSEH 27
G TP G S +RWL R SG Q + HG+ + PP P + I N H
Sbjct: 515 GRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTHGQNVTPPPPYQSIFNGGSH 567
>BT021941-1|AAX51646.1| 362|Drosophila melanogaster RE18811p
protein.
Length = 362
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -1
Query: 357 DSALRRERTWSR----RSIHTRGRHVWDHREETRR 265
D +RR TW R HTRG+ V DH E +
Sbjct: 292 DHLIRRHNTWHATVDLRGTHTRGQMVLDHLREREK 326
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 419 RIPVRANEGDAYVLGALPIGTIVHCVEKEPG 327
+I R N D Y+ G L +G H +EK+ G
Sbjct: 709 KITARYNVEDLYINGTLDLGQFFHRLEKQAG 739
>AE014298-1940|AAF48302.1| 362|Drosophila melanogaster CG12177-PA
protein.
Length = 362
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -1
Query: 357 DSALRRERTWSR----RSIHTRGRHVWDHREETRR 265
D +RR TW R HTRG+ V DH E +
Sbjct: 292 DHLIRRHNTWHATVDLRGTHTRGQMVLDHLREREK 326
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,401,527
Number of Sequences: 53049
Number of extensions: 606566
Number of successful extensions: 1956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1956
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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