Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h17
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...   139   2e-33
Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   6.2  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    28   6.2  
U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score =  139 bits (336), Expect = 2e-33
 Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
 Frame = -2

Query: 557 KVXQIIEDGCRTAHVALVAVGDKLKYSLATENMKAGDIIKTSCKLPRIPVRANEGDAYVL 378
           ++ +I  D  RT H+AL A  +  ++ LATENMKAGD+I TS  L   PV   EG+AY +
Sbjct: 106 RILEIRRDPNRTCHIALCAGINGKRWILATENMKAGDVISTSGHLSENPVIGVEGNAYPI 165

Query: 377 GALPIGTIVHCVEKEPGQGG-LYIHAAGTSGTIVRKQDDRVIVQMPSKRLFSFNQLCMAV 201
           G+L  GT+++ +E+ P      ++ AAGTS TIVR Q D  +V++P K  FS ++ CMA 
Sbjct: 166 GSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDFTVVKLPHKHEFSLHRTCMAT 225

Query: 200 VGRLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPSE 30
           VGRLS+        GS Q +R  G +  SGL+ +K G  GRK++   PV+ +  P +
Sbjct: 226 VGRLSHADIDGKIFGSAQMHRRFGYKMSSGLFHKKDGYFGRKVRALPPVRILDTPPQ 282


>Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical
           protein R05H5.2 protein.
          Length = 372

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -1

Query: 162 YRVPTAEQVAREPASLRSVAAEVWSSRKKDQT 67
           Y +PT E   RE +S RS++A V++S  +D++
Sbjct: 137 YCLPTVESPQRESSSFRSISATVFASLLRDRS 168


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 200 VGRLSNVLHGSTPIGSPQRNRWL-GNRPRSGLWQRKSGRHGRKIKPPKPVKQ-ICNPSEH 27
           +G    +    T   +PQ +    GN   SG W RK  ++ +K K  K  K+ I NP+  
Sbjct: 380 IGGGQGITQMGTMAAAPQSHTHTDGNASSSGSWFRKD-KNKKKDKKSKIKKEDISNPTNF 438

Query: 26  QIAAH 12
           Q  AH
Sbjct: 439 QHKAH 443


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 200 VGRLSNVLHGSTPIGSPQRNRWL-GNRPRSGLWQRKSGRHGRKIKPPKPVKQ-ICNPSEH 27
           +G    +    T   +PQ +    GN   SG W RK  ++ +K K  K  K+ I NP+  
Sbjct: 206 IGGGQGITQMGTMAAAPQSHTHTDGNASSSGSWFRKD-KNKKKDKKSKIKKEDISNPTNF 264

Query: 26  QIAAH 12
           Q  AH
Sbjct: 265 QHKAH 269


>U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical
           protein C13E3.1 protein.
          Length = 770

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 188 SNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIK 69
           S +LH S P  SPQ   WL    R G+ ++K+ +  R+++
Sbjct: 595 SEILH-SMPGLSPQTKTWLKQVTRYGVLKQKADKEERRVE 633


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,430,481
Number of Sequences: 27780
Number of extensions: 305026
Number of successful extensions: 852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)