Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14h17
(621 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 25 0.79
AY656663-1|AAT68000.1| 148|Apis mellifera pteropsin protein. 24 1.4
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 23 2.4
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 23 3.2
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 4.2
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 4.2
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 4.2
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 4.2
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 22 4.2
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 7.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.7
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 24.6 bits (51), Expect = 0.79
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Frame = -2
Query: 455 AGDIIKTSCKLPRIPV------RANEG--DAYVLGALPIGTIVHCVEKEPGQGGLY-IHA 303
AG+ ++ C + P+ RAN D LP GT+V ++ G G+Y A
Sbjct: 532 AGETLRLKCPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSA 591
Query: 302 AGTSGTIVRKQDDRVIVQMP 243
G R+ D ++ P
Sbjct: 592 RNKQGHSARRSGDVAVIVPP 611
>AY656663-1|AAT68000.1| 148|Apis mellifera pteropsin protein.
Length = 148
Score = 23.8 bits (49), Expect = 1.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 436 VLIISPAFMFSVAKLYFNLSPTATKA 513
+L SP ++A YFN P+AT A
Sbjct: 121 LLAWSPYAALAIAAQYFNAKPSATVA 146
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 23.0 bits (47), Expect = 2.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 53 KQICNPSEHQIAAHNTK 3
KQIC P H + H+ K
Sbjct: 145 KQICRPKIHVFSLHDNK 161
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 22.6 bits (46), Expect = 3.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 576 GSTTRRKSYXDYRRWMQNCACSFSGSW*QV 487
G R DY RW+Q A F SW +V
Sbjct: 158 GMAYHRGHRKDYERWVQQGA--FGWSWDEV 185
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 186 QRSSRQHTYRVPTAEQVAREPASLRSVAAEVWSSRKKDQTPK 61
+R+SR+ R EQ + + + E W R +D+T +
Sbjct: 32 ERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSRDRTER 73
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 186 QRSSRQHTYRVPTAEQVAREPASLRSVAAEVWSSRKKDQTPK 61
+R+SR+ R EQ + + + E W R +D+T +
Sbjct: 32 ERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSRDRTER 73
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 186 QRSSRQHTYRVPTAEQVAREPASLRSVAAEVWSSRKKDQTPK 61
+R+SR+ R EQ + + + E W R +D+T +
Sbjct: 32 ERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSRDRTER 73
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 186 QRSSRQHTYRVPTAEQVAREPASLRSVAAEVWSSRKKDQTPK 61
+R+SR+ R EQ + + + E W R +D+T +
Sbjct: 32 ERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSRDRTER 73
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 95 SGRHGRKIKPPKPVKQICNPSEHQI 21
S R G KI P P + P E +I
Sbjct: 650 SSRRGSKIGSPTPAESTFIPEERRI 674
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.4 bits (43), Expect = 7.3
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 426 TP*NTSSCK*RRCLRIRSFTYRNDSAL-RRERTWSRRSIHTRGRHVWDHRE 277
+P S+ + CL + T + R SRR ++ RGR V RE
Sbjct: 694 SPLEPSAVPSKFCLSVTLLTVATSLVIVSRYAEKSRRMLYLRGREVVAQRE 744
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.0 bits (42), Expect = 9.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 392 DAYVLGALPIGTIVHCVEKEP 330
D V+ + PIG + H + K+P
Sbjct: 163 DEDVICSTPIGNLSHALLKDP 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,866
Number of Sequences: 438
Number of extensions: 3975
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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