Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14h16
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 116 1e-27
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 115 2e-27
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 0.76
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 2.3
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 4.0
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 24 5.3
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 24 5.3
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 5.3
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 24 5.3
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 23 7.1
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 23 7.1
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.3
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 9.3
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 23 9.3
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 23 9.3
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 23 9.3
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 23 9.3
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 116 bits (278), Expect = 1e-27
Identities = 52/86 (60%), Positives = 61/86 (70%)
Frame = -2
Query: 267 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 88
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 87 XXRMRHLKIVRRRFRNGFKEGETNAA 10
RM +LK V R F+NGF+ G+ AA
Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKPAAA 86
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 115 bits (276), Expect = 2e-27
Identities = 51/86 (59%), Positives = 61/86 (70%)
Frame = -2
Query: 267 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 88
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 87 XXRMRHLKIVRRRFRNGFKEGETNAA 10
RM +LK V R F+NGF+ G+ +A
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPTSA 86
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 0.76
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 59 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 172
T+F + +PV+ + FT+ W N A +P A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.0 bits (52), Expect = 2.3
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = -2
Query: 231 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 148
N H C C Y + S C QC P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 24.2 bits (50), Expect = 4.0
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 168 ILIFECDMTIYHIFCITYGSYFGAYRSLRYPSSS 269
+LI+ CD +++ CI + S + + S++ S
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVKESKES 244
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 23.8 bits (49), Expect = 5.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 161 WAHFDF*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 268
W+H D D H LHN W R K + F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.8 bits (49), Expect = 5.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -1
Query: 163 PMWISCSKITILPLVSEG*AQEDYW 89
P W+SC+++ +L + +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.8 bits (49), Expect = 5.3
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -2
Query: 240 KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 148
KR N L R +Q ++C CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 5.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 261 KGTSSFGKRRNKTHTLCRRCGRSS 190
KGTS R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 257 VPQASVSAEIRPIRYAEDVVDRHITF 180
+PQ S+ + Y ED++D +++F
Sbjct: 704 IPQGSILSSFLCHFYMEDLIDEYLSF 729
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 23.4 bits (48), Expect = 7.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 1 AFLGGVGFPFFKTITEAP 54
AFL G GFP F+T P
Sbjct: 155 AFLWGTGFPKFRTNAIVP 172
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 23.0 bits (47), Expect = 9.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 198 YHIFCITYGSYFGAYRSLRYPSS 266
Y FCI S F SL YP+S
Sbjct: 608 YFQFCIESDSKFDEGTSLEYPNS 630
>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 23.0 bits (47), Expect = 9.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 174 IFECDMTIYHIFCITYGSYFGAYRSLRYPSSSCH 275
+F ++Y I YF + LRY S S H
Sbjct: 4 LFILSCSVYDFSSILLHQYFTQFFVLRYASPSMH 37
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 187 SHSKIKMRPMWISCSKITILP 125
SHS MRP+ I + +T+ P
Sbjct: 697 SHSTFTMRPLSIERTTLTVTP 717
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 23.0 bits (47), Expect = 9.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 288 RIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQ 178
+++K ++T +FGK+ H L CG H Q
Sbjct: 47 KVLKYFRITGCLINFGKQPANDHHLWGHCGARLKHTQ 83
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.0 bits (47), Expect = 9.3
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 275 VTR*RRVPQASVSAEIRPIRYAEDVVDRHITFKNQNAPNVDILQQNYD 132
+TR +PQ S RP+ E +VD IT N N V D
Sbjct: 337 LTRPIEIPQ-HFSPIARPLTSQEAIVDMDITSNNINLSPVSHFSNGLD 383
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 23.0 bits (47), Expect = 9.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 100 EDYWNWPHASFEDCQEAL 47
+D W+W H S +E+L
Sbjct: 442 KDLWSWIHLSHRQSEESL 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,096
Number of Sequences: 5004
Number of extensions: 21712
Number of successful extensions: 49
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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