Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h11
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0223 + 21659549-21659729,21659888-21659979                       29   5.7  
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376...    29   5.7  
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420...    29   5.7  
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174...    28   7.6  
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785...    28   10.0 

>09_06_0223 + 21659549-21659729,21659888-21659979
          Length = 90

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 648 YRRRPSLCASSDSDNEHRGSEHGRRE 725
           ++RR      S  DNE +G +HGRRE
Sbjct: 35  WQRRKRDTNGSGKDNEGKGGQHGRRE 60


>03_05_0832 -
           28037047-28037315,28037428-28037530,28037664-28037695,
           28037788-28038005,28038145-28038260,28038514-28038757,
           28039129-28039216,28039513-28039588,28040126-28040164,
           28040347-28040405,28041292-28041529
          Length = 493

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 176 YTVPWGFNGFINYIK 220
           Y VPWG  G +NYIK
Sbjct: 377 YIVPWGMYGCVNYIK 391


>03_01_0570 -
           4205739-4205776,4205846-4205897,4205939-4206067,
           4206183-4206258,4206360-4206412,4206494-4206555,
           4206624-4206734,4206813-4206979,4207089-4207268,
           4207598-4207687,4207773-4207921,4208367-4208501,
           4208575-4208630,4208790-4208823,4209409-4209519
          Length = 480

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -1

Query: 720 VARAPSLYAHYLSLKTRTGM---VVAGSGSTLH-RVSEHPSTLVYYICSLLVFTYLQTGA 553
           + R+P +  H LSL  + GM   +VA  GS  H  + E+PS  ++ + S+ +   L+   
Sbjct: 21  IGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKSVQLTGILKISG 80

Query: 552 A 550
           A
Sbjct: 81  A 81


>04_01_0150 +
           1741639-1741742,1742432-1742543,1742856-1743594,
           1743724-1743776,1743914-1743991,1744107-1744405,
           1744660-1745476,1745576-1745842,1745987-1746181,
           1746287-1746372,1746469-1746657,1747138-1747207,
           1747399-1747552,1747706-1747832,1749158-1749254
          Length = 1128

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 771 SPSTCTQNKRPGTHTTPVARAPSLYAHYLSLKTRTGMVVAGSGSTLHRVSEHPS 610
           +PS  TQ  +P    +P   +PS Y      K     VV+ S S   R++  PS
Sbjct: 525 TPSPVTQTVQPIQVASPHVTSPSAYGKSSVPKPSVARVVSHSASIKSRLASSPS 578


>02_05_0544 +
           29876337-29876524,29876850-29876882,29878390-29878577,
           29879755-29879811,29879909-29880061,29880812-29881278,
           29881477-29881635,29881718-29881834,29881966-29882117,
           29883436-29883530,29883619-29884525,29884604-29884688,
           29884775-29884843,29885045-29885224,29885367-29885495
          Length = 992

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
 Frame = +3

Query: 489 KVFSKNIQIHVSRCGAAAATRLHRSGDM*KRAGNKCNIQEWKGAPKPYARWTR--YRRRP 662
           KVFS N Q H +    + + + H+S  M    G     +   G+PKPY+   +    R P
Sbjct: 593 KVFSNNNQPHGAAFQHSHSYQDHKSEHMSSSPGTLTGPEFLWGSPKPYSEHAQSPIWRPP 652

Query: 663 SL--CASSDSDNEHRGSEHGRREWCVF 737
           ++     S++ ++ +G  +G R+  +F
Sbjct: 653 AIGHAIPSNTRSQGQGLLYGGRQASLF 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,607,709
Number of Sequences: 37544
Number of extensions: 467431
Number of successful extensions: 1153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)