Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h11
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.4  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   5.8  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   7.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   7.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -2

Query: 641 PPCIGFRS--TLPLLYITFV---PCSFSHISRPVQPCCCGCSASRDVNLYIFT 498
           PP +G++   + P   +TF    P + + I  PV+PC   C  + D    +++
Sbjct: 199 PPLVGWKDKRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWICELTNDAGYVVYS 251


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 789  LYGTLSSPSTCTQNKRPGTHTTPVARAPS 703
            +Y  + +P+T T ++ PG     +   PS
Sbjct: 1272 VYARVIAPTTITSSQSPGNQQQTIQTQPS 1300


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 787 LRDFIVAIYLYTK 749
           L   IVAIYLYTK
Sbjct: 144 LYGLIVAIYLYTK 156


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 223 YFNIIYETVEPPGYSVPVSCG 161
           Y+NI Y    P    VPV CG
Sbjct: 109 YYNINYIEQIPVPVPVPVYCG 129


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 223 YFNIIYETVEPPGYSVPVSCG 161
           Y+NI Y    P    VP+ CG
Sbjct: 108 YYNINYIEQVPVPIPVPIYCG 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,629
Number of Sequences: 438
Number of extensions: 4731
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)