Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h10
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    28   1.3  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    27   2.9  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -1

Query: 598 PTV*LCCVGNVQYLYR*ILPTTARYCFRRFLYGLTQ*RNRAGVSNCAVWDSCAISILLTS 419
           PTV    + N  Y+    L     Y + +  Y + Q   + G+SN     SC  +   TS
Sbjct: 243 PTVPQAVIYNSPYIIT--LHNQYIYIWNKETYAMIQ---QIGISNIYSTFSCHKNTFFTS 297

Query: 418 NVYLWLVLAAD 386
           N Y+W++   D
Sbjct: 298 NSYVWILTPED 308


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 248 DMLLLRDEAVEDASPSGTAVLPNPGNP 168
           D +++     E+ +PS TA LP+P NP
Sbjct: 60  DGIMVGSRTAENDNPSLTAKLPDPANP 86


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +3

Query: 600 TQNPAESASNHTAQKINGK*STVVPTSTSKWEIKHRRAHLNLKNGK*STE 749
           + + +   + H+  K +GK +      +SK +I+  + H  L+NG+ +T+
Sbjct: 55  SHSTSSDITRHSNAKNSGKDTQFYEEPSSKQDIELHKLHEKLRNGQITTK 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,095
Number of Sequences: 5004
Number of extensions: 67676
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)