Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h10
         (766 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058470-1|AAL13699.1| 1018|Drosophila melanogaster GH27433p pro...    31   1.7  
AE014297-1858|AAF55066.3| 1131|Drosophila melanogaster CG8279-PA...    31   1.7  
AY061177-1|AAL28725.1|  101|Drosophila melanogaster LD14555p pro...    29   9.2  

>AY058470-1|AAL13699.1| 1018|Drosophila melanogaster GH27433p protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 638  SKNKREVKHRRAHLNLKMGNKAPSCPPQPQKWEVKHRMPTSTS 766
            SK K  +K   +H++  M +K+P+ P QPQ      RM  S+S
Sbjct: 954  SKPKTSLKLLESHVSEDMDDKSPTSPSQPQASGSMGRMSASSS 996


>AE014297-1858|AAF55066.3| 1131|Drosophila melanogaster CG8279-PA
            protein.
          Length = 1131

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 638  SKNKREVKHRRAHLNLKMGNKAPSCPPQPQKWEVKHRMPTSTS 766
            SK K  +K   +H++  M +K+P+ P QPQ      RM  S+S
Sbjct: 1067 SKPKTSLKLLESHVSEDMDDKSPTSPSQPQASGSMGRMSASSS 1109


>AY061177-1|AAL28725.1|  101|Drosophila melanogaster LD14555p
           protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 247 ICFC*EMKRSRTPRRQERPCYRILATPDREPALKL*KRSLAAPLPLFCAWRSCVRFLLKH 68
           +C C   K ++T +R E+ C R L T     ALK  K    AP P  C  +  ++ +L+ 
Sbjct: 26  VCACVGAKWNQTSQRVEQCCQRSLIT-----ALKK-KSPFFAPPPPLCQRKLKIQIVLQK 79

Query: 67  VW 62
            W
Sbjct: 80  FW 81


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,174,333
Number of Sequences: 53049
Number of extensions: 791651
Number of successful extensions: 2194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2193
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)