Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h09
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    28   1.3  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   9.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   9.0  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   9.0  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 190 ERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 95
           ERG T  PK   K+   K  I A +  +TTA+
Sbjct: 17  ERGFTNSPKTHPKMSSLKSFIKAVRASKTTAE 48


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 430 KHQWYAQQFADRYRKL 383
           KHQ+Y ++FAD +R++
Sbjct: 404 KHQYYDEEFADVWREI 419


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 564 LPDLTXMLDKLAEQLLEAINTMQQTQRNELNNTNSILTN 448
           +PD   M + L  QLL  +   ++ ++ EL N  +  TN
Sbjct: 526 IPDYCGMSNDLKHQLLTELEVSKRPKKPELPNQENKTTN 564


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 128 DSFLVLLQLFRLFWGFCYAALS*RHGMAAAFFCRRF 235
           +  L +  LF LFWG C  A +    +   +F + +
Sbjct: 446 NGLLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTY 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,854
Number of Sequences: 5004
Number of extensions: 39630
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)