Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h09
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13...    32   0.32 
11_06_0598 - 25391923-25393197                                         30   1.3  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    28   5.3  
04_03_0070 + 10677677-10679989                                         28   5.3  
09_06_0002 + 20121846-20123308,20123420-20123426                       28   7.0  
03_04_0007 + 16265360-16266982                                         27   9.2  

>12_01_0019 -
           135627-135983,136564-136797,137118-137196,137268-137383,
           137847-137991,138177-138594,138644-138649,139315-139945
          Length = 661

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 1   LFVHFLILQPHSLIFPTLEKRHSPRGSAKKKHLLWCAAF 117
           L  HFL   P S  F  L  +H P+    + HLL C AF
Sbjct: 29  LLPHFLHRSPPSPCFLLLRTQHKPKPPQPQLHLLLCTAF 67


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -1

Query: 202 MTLRERGVTKPPKKSEKLQQYKKAIAAEQT 113
           ++LR +GVT+ PKK EKL QY + +   QT
Sbjct: 95  LSLRNKGVTQLPKKIEKL-QYLETLDIRQT 123


>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 500  IVLMASNNCSANLSNMXVKSGNESVISESNVFN 598
            +V + SN CS    NM +KS  E + ++SN F+
Sbjct: 944  VVCLGSNTCSNKTKNMSIKS--EHIYNKSNQFD 974


>04_03_0070 + 10677677-10679989
          Length = 770

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 28  PHSLIFPTLEKRHSPRGSAKKKHLLWCAAFA 120
           P S I P+ ++RHS  G  +K+H L  AA+A
Sbjct: 133 PISSIPPSSQRRHSTGGGGRKRHAL-AAAYA 162


>09_06_0002 + 20121846-20123308,20123420-20123426
          Length = 489

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 338 LTKPTDKNWTSCTLWLTISKIYSRE 264
           L  P+  + T+C+LW+T S I+ +E
Sbjct: 238 LAHPSPSSSTNCSLWMTKSAIFPKE 262


>03_04_0007 + 16265360-16266982
          Length = 540

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -2

Query: 603 TRLNTLLSEITDSLPDLTXMLDKLAEQLLEAINTMQQTQRNELNNTNSILTNLAS 439
           TRL    + + D L     M+D L E+LL+ +  M+  +  E       +++LAS
Sbjct: 388 TRLVEAQNALEDVLDQANPMVDMLREELLQLLRLMETQEAYERAGRAYAVSSLAS 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,263
Number of Sequences: 37544
Number of extensions: 262294
Number of successful extensions: 860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)