Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h09
         (628 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058244-1|AAL13473.1|  796|Drosophila melanogaster GH01087p pro...    29   3.9  
AE014297-1919|AAF55113.1|  796|Drosophila melanogaster CG7262-PA...    29   3.9  
AE013599-2370|AAF57935.1|  394|Drosophila melanogaster CG6472-PA...    29   5.1  
BT001476-1|AAN71231.1|  607|Drosophila melanogaster LD19244p pro...    29   6.8  
AF145609-1|AAD38584.1|  974|Drosophila melanogaster BcDNA.GH0283...    29   6.8  
AE014298-2568|AAO41693.1|  975|Drosophila melanogaster CG8611-PB...    29   6.8  
AE014298-2567|AAF48727.2|  974|Drosophila melanogaster CG8611-PA...    29   6.8  
AE014296-2785|AAN11739.2|  657|Drosophila melanogaster CG3849-PB...    29   6.8  
AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA...    29   6.8  
AJ294538-1|CAC82378.1|  660|Drosophila melanogaster Lasp protein...    28   9.0  

>AY058244-1|AAL13473.1|  796|Drosophila melanogaster GH01087p
           protein.
          Length = 796

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = -2

Query: 615 DVILTRLNTLLSEITDSLPDLTXMLDKLAEQLLEAI-----NTMQQTQRNELNNTNSILT 451
           DV+L  +  L  E+   LPD+     ++A++  + +     ++++QTQ  +L      L+
Sbjct: 711 DVVLGNVKQLSGEVIKVLPDVIVAAMEIAQKQYKQLKAGSGSSLEQTQMQQLRQRAKALS 770

Query: 450 NLASS 436
           N+A++
Sbjct: 771 NMAAT 775


>AE014297-1919|AAF55113.1|  796|Drosophila melanogaster CG7262-PA
           protein.
          Length = 796

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = -2

Query: 615 DVILTRLNTLLSEITDSLPDLTXMLDKLAEQLLEAI-----NTMQQTQRNELNNTNSILT 451
           DV+L  +  L  E+   LPD+     ++A++  + +     ++++QTQ  +L      L+
Sbjct: 711 DVVLGNVKQLSGEVIKVLPDVIVAAMEIAQKQYKQLKAGSGSSLEQTQMQQLRQRAKALS 770

Query: 450 NLASS 436
           N+A++
Sbjct: 771 NMAAT 775


>AE013599-2370|AAF57935.1|  394|Drosophila melanogaster CG6472-PA
           protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 123 PSKRCAPQQMFLLCRTTGRVPFF 55
           P++RC P  MF +CR  G  P F
Sbjct: 287 PAQRCEPSDMFGICREPGGGPAF 309


>BT001476-1|AAN71231.1|  607|Drosophila melanogaster LD19244p
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = -1

Query: 274 THGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 95
           T   V NK          KS G + +  E  V  P K+S K +Q      A +   TT D
Sbjct: 463 TEDEVGNKEDGEKDKQKSKSSGSSPSSSEDEV--PLKRSNKFKQPPAKKKARKL--TTLD 518

Query: 94  VSSLQNHGESAVFQ 53
           VSS ++HG    F+
Sbjct: 519 VSSEEDHGSDEDFK 532


>AF145609-1|AAD38584.1|  974|Drosophila melanogaster BcDNA.GH02833
           protein.
          Length = 974

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = -1

Query: 289 RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTL 110
           R ++   G  D + S  ++     SGG +  ++     K  KKS  ++   ++     T 
Sbjct: 195 RQKRREEGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDSGESGEESATS 254

Query: 109 RTTADVSSLQNHGE 68
               D SS Q+ G+
Sbjct: 255 DEEPDESSAQSPGQ 268


>AE014298-2568|AAO41693.1|  975|Drosophila melanogaster CG8611-PB,
           isoform B protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = -1

Query: 289 RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTL 110
           R ++   G  D + S  ++     SGG +  ++     K  KKS  ++   ++     T 
Sbjct: 196 RQKRREEGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDSGESGEESATS 255

Query: 109 RTTADVSSLQNHGE 68
               D SS Q+ G+
Sbjct: 256 DEEPDESSAQSPGQ 269


>AE014298-2567|AAF48727.2|  974|Drosophila melanogaster CG8611-PA,
           isoform A protein.
          Length = 974

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = -1

Query: 289 RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTL 110
           R ++   G  D + S  ++     SGG +  ++     K  KKS  ++   ++     T 
Sbjct: 195 RQKRREEGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDSGESGEESATS 254

Query: 109 RTTADVSSLQNHGE 68
               D SS Q+ G+
Sbjct: 255 DEEPDESSAQSPGQ 268


>AE014296-2785|AAN11739.2|  657|Drosophila melanogaster CG3849-PB,
           isoform B protein.
          Length = 657

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 511 HQHDAANAAQRVEQHQLYFDQFSVEHHKHQWYAQQ 407
           HQ       Q+ +Q+Q +  Q   + H+HQ Y QQ
Sbjct: 177 HQQQQQLQHQQQQQYQQHQQQLQQQQHQHQHYLQQ 211


>AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA
            protein.
          Length = 2759

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = -1

Query: 274  THGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 95
            T   V NK          KS G + +  E  V  P K+S K +Q      A +   TT D
Sbjct: 1619 TEDEVGNKEDGEKDKQKSKSSGSSPSSSEDEV--PLKRSNKFKQPPAKKKARKL--TTLD 1674

Query: 94   VSSLQNHGESAVFQ 53
            VSS ++HG    F+
Sbjct: 1675 VSSEEDHGSDEDFK 1688


>AJ294538-1|CAC82378.1|  660|Drosophila melanogaster Lasp protein
           protein.
          Length = 660

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 508 QHDAANAAQRVEQHQLYFDQFSVEHHKHQWYAQQ 407
           QH      Q+ +QHQ    Q   + H+HQ Y QQ
Sbjct: 184 QHQQQQQQQQYQQHQ---QQLQQQQHQHQHYLQQ 214


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,353,941
Number of Sequences: 53049
Number of extensions: 462170
Number of successful extensions: 1893
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)