Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h09
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical p...    31   0.67 
AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    31   0.89 
Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024201-3|AAK93866.1|  238|Caenorhabditis elegans Dnaj domain (...    29   2.1  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   3.6  
L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    28   4.8  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z81059-1|CAB02925.1|  249|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        27   8.3  
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    27   8.3  

>Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical
           protein F11E6.11 protein.
          Length = 201

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 150 NFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDMLILLSTFP*VYF 281
           +FS FF G + P    ++ WP      VLS +++LLS F  +Y+
Sbjct: 144 SFSVFFNGSIMPDCSYLVIWPTF----VLSFLILLLSIFVIIYY 183


>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 131 YRCRANAAHHSRCFFFAEPRGECRFSR 51
           + CRA AA   RC F  E R  CR S+
Sbjct: 49  FSCRACAAFFRRCHFLKENRRRCRLSK 75


>Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical
           protein F11F1.5 protein.
          Length = 246

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
 Frame = -2

Query: 609 ILTRLNTLLSEITD---SLPDLTXMLDKLAE-------QLLEAINTMQQTQRNELNNTNS 460
           I T +  LL+E+ D   SLPD+   L K+ +       +   AIN ++ T + ELN    
Sbjct: 166 IFTLIKQLLNEVADILQSLPDILGKLSKIVDDKNLTSIEKNNAINQLKGTNKIELNTIIF 225

Query: 459 ILTNL 445
           I+T L
Sbjct: 226 IITQL 230


>Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical
           protein F11F1.8 protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -2

Query: 609 ILTRLNTLLSEITDSLPDLTXMLDK---LAEQLLEAINTMQQTQRNELNNTNSILTNL 445
           +L  +  +L  + D L DL+ ++D     + + ++AIN ++ T + ELN    I+T L
Sbjct: 103 LLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAINQLRGTNKIELNTIIFIITQL 160


>AC024201-3|AAK93866.1|  238|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 30 protein.
          Length = 238

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/42 (26%), Positives = 28/42 (66%)
 Frame = -3

Query: 299 LWLTISKIYSRER*QQNKHVRQNADKKKRRPCHDVTRARRNK 174
           LW+T++K+++ +R ++ K + + A+++KRR    + +A   +
Sbjct: 146 LWITVTKVFA-DREKKRKMLEERANEEKRRSTEALVQAAEKR 186


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 241 TCLFCCQRSREYIFDIVNQSVHEVQFLSVGFV 336
           TCLF C     YI DI+  ++  V  LS+G++
Sbjct: 574 TCLFACVEQIPYIKDILKSALDSV--LSIGYI 603


>L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical
           protein C06G4.4 protein.
          Length = 129

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 181 VTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAV 59
           +++ PK+SEK   YKKA+A ++ ++    +      G+  V
Sbjct: 1   MSEAPKRSEKSADYKKAVAKQRRIKKLRKMKIKDRAGDVVV 41


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 437 LDAKLVKIELVLFNSLRCVCCIVLMASNNCSANLSNMXVKSGNESVISESNVFNLV 604
           LDAKL +    L + + C+   +    NNC   + N+ ++ G+E  +++  V   +
Sbjct: 663 LDAKLCEDYGNLEDIVLCIFISMEELPNNCEIIMGNLIIEGGDEDYVTKLRVLEFL 718


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 484  QRVEQHQLYFDQFSVEHHKHQ 422
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1565 QQHQQHQQYMQQQQQHHHQHQ 1585


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 484  QRVEQHQLYFDQFSVEHHKHQ 422
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1563 QQHQQHQQYMQQQQQHHHQHQ 1583


>Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical
           protein W06D12.5 protein.
          Length = 631

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 570 DSLPDLTXMLDKLAEQLLEAINTMQQTQRNE 478
           D + +L  +LD+LAE + E++N +  T   E
Sbjct: 248 DHVNNLEHLLDRLAENITESVNNINTTTTEE 278


>Z81059-1|CAB02925.1|  249|Caenorhabditis elegans Hypothetical
           protein F11F1.2 protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -2

Query: 609 ILTRLNTLLSEITDSLPDLTXMLDKLAEQLLEAINTMQQTQRNELNNTNSIL 454
           +L++LN L+  + D L +L   +  L EQLL+ +  + Q+  + L   + I+
Sbjct: 144 VLSKLNGLVPGLGDELENLITTVLNLIEQLLKEVADILQSLPDVLGELSKIV 195


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 484  QRVEQHQLYFDQFSVEHHKHQ 422
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1563 QQHQQHQQYMQQQQQHHHQHQ 1583


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 236 VGHAYFVVNVPVSIFLISLTKVC 304
           V H Y +VN+  S+F++ +T +C
Sbjct: 62  VNHFYHMVNISYSLFVLLITVIC 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,643,113
Number of Sequences: 27780
Number of extensions: 237278
Number of successful extensions: 914
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)