Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h07
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    84   2e-17
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    28   1.4  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    28   1.4  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   1.4  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    27   1.8  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   2.4  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   2.4  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   9.7  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 40/75 (53%), Positives = 51/75 (68%)
 Frame = -1

Query: 660 STTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETT 481
           ST VET +P SEI PGL LLG + + F  V + YEP+ DG++ Q +IS+S DAT+HFET 
Sbjct: 354 STIVETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETL 413

Query: 480 CLDVLKIYKHGTGEE 436
             DV  IYK  TG +
Sbjct: 414 TCDVRDIYKRMTGTD 428


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 406 KFQLDFREIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 567
           K  +   +IKFF + +F  F     SC+    G I  R+K L    +I W I++
Sbjct: 38  KINIKTDKIKFFLNNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 88


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 406 KFQLDFREIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 567
           K  +   +IKFF + +F  F     SC+    G I  R+K L    +I W I++
Sbjct: 58  KINIKTDKIKFFLNNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 108


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 406 KFQLDFREIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 567
           K  +   +IKFF + +F  F     SC+    G I  R+K L    +I W I++
Sbjct: 38  KINIKTDKIKFFLNNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 88


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 406 KFQLDFREIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 567
           K  +   +IKFF   +F  F     SC+    G I  R+K L    +I W I++
Sbjct: 38  KINIKTDKIKFFLDNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 88


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 128 SAQVKSCLYVIL*LICIPIW 69
           +  + + L+ IL L+CIPIW
Sbjct: 242 TCSISAALFFILLLVCIPIW 261


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 128 SAQVKSCLYVIL*LICIPIW 69
           +  + + L+ IL L+CIPIW
Sbjct: 232 TCSISAALFFILLLVCIPIW 251


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 639 DPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDAT 499
           +PES +       G ++  FV   D  E +     S +FIS S D T
Sbjct: 174 EPESMLDAEKKSSGILQTLFVGHKDIVERVRSLESSSVFISASADNT 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,439
Number of Sequences: 5004
Number of extensions: 53648
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)