Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14h07
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 88 7e-18
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 87 9e-18
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 85 4e-17
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 83 3e-16
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186... 29 2.5
10_05_0057 - 8660321-8660422,8661022-8661050,8662286-8662676 29 2.5
04_03_0612 + 18023354-18023916,18024046-18024805 28 7.6
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 87.8 bits (208), Expect = 7e-18
Identities = 40/79 (50%), Positives = 53/79 (67%)
Frame = -1
Query: 660 STTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETT 481
ST ET+ PESE++PG+ LLG + + F + D YEP+++ S F+S SYDATTHFETT
Sbjct: 355 STEAETDHPESELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATTHFETT 414
Query: 480 CLDVLKIYKHGTGEEFDFS 424
DVL +Y TG+ D S
Sbjct: 415 VTDVLNMYTLITGKTVDLS 433
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 87.4 bits (207), Expect = 9e-18
Identities = 39/79 (49%), Positives = 54/79 (68%)
Frame = -1
Query: 660 STTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETT 481
ST ET++P+SE++PG+ LLG + + F + D YEP+++ S F+S SYDATTHFETT
Sbjct: 355 STEAETDNPQSELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATTHFETT 414
Query: 480 CLDVLKIYKHGTGEEFDFS 424
DVL +Y TG+ D S
Sbjct: 415 VTDVLNMYTLITGKAVDLS 433
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 85.4 bits (202), Expect = 4e-17
Identities = 37/79 (46%), Positives = 50/79 (63%)
Frame = -1
Query: 660 STTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETT 481
ST E + PE E++PG+ LLG + + F + D YEP + + F++ SYDATTHFETT
Sbjct: 355 STEAEADKPEIELKPGIDLLGPVEETFFDIYDRYEPTNTADEDNCFVTNSYDATTHFETT 414
Query: 480 CLDVLKIYKHGTGEEFDFS 424
DVL +Y TG+E D S
Sbjct: 415 VKDVLALYSKITGKELDLS 433
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/79 (46%), Positives = 51/79 (64%)
Frame = -1
Query: 660 STTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETT 481
S E+ +P +E++PG+ LLG + + F+ D +EP +D S FIS SYDATTHFE+T
Sbjct: 373 SAQAESENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATTHFEST 432
Query: 480 CLDVLKIYKHGTGEEFDFS 424
+DVL IY TG+ D S
Sbjct: 433 VMDVLSIYTKITGKTVDLS 451
>10_08_0015 +
14116129-14116691,14116810-14117128,14117588-14118664,
14118754-14119056
Length = 753
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = -1
Query: 555 PIDDGSQSQIFISESYDATTHFETTCLDVL------KIYKHGTGEEFDFSKVKLELGEED 394
P D + +E D T ETT DVL ++ HG G+ D S V ++L D
Sbjct: 36 PSGDQTLDSDVANEPNDGETEIETTVDDVLSESTHEQVENHGDGDNVDDSSVHIDLDSSD 95
>10_05_0057 - 8660321-8660422,8661022-8661050,8662286-8662676
Length = 173
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 450 GTGEEFDFSKVKLELGEEDQ*ITERSHEKVICILLVIQ 337
G+GEE + K KLE+GE+ + S + V+ +L +Q
Sbjct: 65 GSGEEVERIKSKLEIGEDGSPTSNSSEKTVVELLRALQ 102
>04_03_0612 + 18023354-18023916,18024046-18024805
Length = 440
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 488 KQLVWMCLKFINMVLGKNLISLKSSWNLVKRIS 390
K L +CL+++N V+ K++I L S +K IS
Sbjct: 223 KALERLCLEYVNGVIDKDMIVLSQSCKNLKSIS 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,697
Number of Sequences: 37544
Number of extensions: 275372
Number of successful extensions: 496
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -