Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h07
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003563-1|AAO39567.1|  443|Drosophila melanogaster LP03430p pro...   150   2e-36
AY069697-1|AAL39842.1|  443|Drosophila melanogaster LD46767p pro...   150   2e-36
AE014134-1641|AAF52777.1|  443|Drosophila melanogaster CG4422-PA...   150   2e-36
L03209-1|AAA28567.1|  448|Drosophila melanogaster GDP dissociati...   134   1e-31
AE013599-1353|AAF58611.2| 5303|Drosophila melanogaster CG13185-P...    31   1.0  

>BT003563-1|AAO39567.1|  443|Drosophila melanogaster LP03430p
           protein.
          Length = 443

 Score =  150 bits (363), Expect = 2e-36
 Identities = 69/90 (76%), Positives = 79/90 (87%)
 Frame = -1

Query: 660 STTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETT 481
           STTVET +PE EI+PGL LL  I QKFV+++DY EPIDDGS+SQIFISESYDATTHFETT
Sbjct: 354 STTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFISESYDATTHFETT 413

Query: 480 CLDVLKIYKHGTGEEFDFSKVKLELGEEDQ 391
           CLDVL I+K GTGE FDFSK+K ELG+E+Q
Sbjct: 414 CLDVLNIFKRGTGETFDFSKIKHELGDEEQ 443


>AY069697-1|AAL39842.1|  443|Drosophila melanogaster LD46767p
           protein.
          Length = 443

 Score =  150 bits (363), Expect = 2e-36
 Identities = 69/90 (76%), Positives = 79/90 (87%)
 Frame = -1

Query: 660 STTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETT 481
           STTVET +PE EI+PGL LL  I QKFV+++DY EPIDDGS+SQIFISESYDATTHFETT
Sbjct: 354 STTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFISESYDATTHFETT 413

Query: 480 CLDVLKIYKHGTGEEFDFSKVKLELGEEDQ 391
           CLDVL I+K GTGE FDFSK+K ELG+E+Q
Sbjct: 414 CLDVLNIFKRGTGETFDFSKIKHELGDEEQ 443


>AE014134-1641|AAF52777.1|  443|Drosophila melanogaster CG4422-PA
           protein.
          Length = 443

 Score =  150 bits (363), Expect = 2e-36
 Identities = 69/90 (76%), Positives = 79/90 (87%)
 Frame = -1

Query: 660 STTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETT 481
           STTVET +PE EI+PGL LL  I QKFV+++DY EPIDDGS+SQIFISESYDATTHFETT
Sbjct: 354 STTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFISESYDATTHFETT 413

Query: 480 CLDVLKIYKHGTGEEFDFSKVKLELGEEDQ 391
           CLDVL I+K GTGE FDFSK+K ELG+E+Q
Sbjct: 414 CLDVLNIFKRGTGETFDFSKIKHELGDEEQ 443


>L03209-1|AAA28567.1|  448|Drosophila melanogaster GDP dissociation
           inhibitor protein.
          Length = 448

 Score =  134 bits (323), Expect = 1e-31
 Identities = 62/80 (77%), Positives = 69/80 (86%)
 Frame = -1

Query: 660 STTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETT 481
           STTVET +PE EI+PGL LL  I QKFV+++DY EPIDDGS+SQIFISESYDATTHFETT
Sbjct: 355 STTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFISESYDATTHFETT 414

Query: 480 CLDVLKIYKHGTGEEFDFSK 421
           C DVL I+K GTGE FDFSK
Sbjct: 415 CWDVLNIFKRGTGETFDFSK 434


>AE013599-1353|AAF58611.2| 5303|Drosophila melanogaster CG13185-PA
            protein.
          Length = 5303

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = -1

Query: 609  ALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKI---YKHGTGE 439
            AL+GAI    ++ T   +P++       +I+E  D  +   TT  D +KI   Y+H  GE
Sbjct: 3082 ALVGAIELCLLTNTPLIDPVEKNRLKNEYIAEDIDCLSTL-TTAYDFMKIAMKYRH-FGE 3139

Query: 438  EFDFSKVKLEL 406
            E  +S+++L L
Sbjct: 3140 EI-YSELELRL 3149


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,794,695
Number of Sequences: 53049
Number of extensions: 508046
Number of successful extensions: 842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)