Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h06
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         36   0.037
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001...    30   2.4  
07_01_0857 - 7127681-7127830,7128896-7129414                           29   5.5  
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567...    28   9.7  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 90  HTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 203
           H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 125 HQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>07_03_0535 -
           19198130-19198139,19199901-19199995,19200095-19200154,
           19200241-19200349,19200438-19200604,19200694-19200813,
           19200901-19200987,19201068-19201196,19201284-19201362,
           19201451-19201530,19201646-19201726,19201812-19201874,
           19201963-19202139,19202381-19202476,19202610-19202729,
           19202825-19202933,19203016-19203235,19203320-19203405,
           19203491-19203552,19203649-19203685,19203790-19203848,
           19203952-19204037,19204142-19204313
          Length = 767

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +1

Query: 604 AKSGRIRI*PYCSKNKRGSKAPSCPPQPQKXGNKAPSVPXFN 729
           AK  + R  P+   NK+ ++APS PP P+    KAP +P FN
Sbjct: 395 AKIPKFRARPF---NKKIAEAPSFPPLPR----KAPQLPEFN 429


>07_01_0857 - 7127681-7127830,7128896-7129414
          Length = 222

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 711 VXAXLQPXKWEVKHRKCPPQPQKW 782
           V   L+P +W+ + R+C  +PQ+W
Sbjct: 101 VAVHLRPRRWDWRWRRCHWRPQRW 124


>01_07_0291 +
           42555233-42555444,42556515-42556550,42556652-42556796,
           42556885-42556938,42557130-42557260,42557830-42558056,
           42558670-42558846,42558928-42559076
          Length = 376

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 330 ALKLSKI*NPYYRRKRALLHLQRGR 404
           A ++S++  PY RR RA+ HL++GR
Sbjct: 220 AFRMSEVAEPYIRR-RAVRHLEKGR 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,326,484
Number of Sequences: 37544
Number of extensions: 444792
Number of successful extensions: 1202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)