Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h05
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976...   146   1e-35
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988...    29   4.1  
06_03_1230 + 28575661-28575728,28575791-28575861,28575978-285761...    29   5.4  
06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243...    28   9.5  
06_03_1214 + 28469848-28473048                                         28   9.5  

>05_03_0387 +
           13396158-13396271,13396390-13396434,13397004-13397632,
           13397727-13397874,13397971-13398147,13398527-13398595,
           13398699-13398788,13399000-13399158,13399663-13399753,
           13399917-13400008,13400009-13400233,13400394-13400585
          Length = 676

 Score =  146 bits (355), Expect = 1e-35
 Identities = 62/182 (34%), Positives = 116/182 (63%)
 Frame = -3

Query: 770 PASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSYEYLYH 591
           P  A  +YYRD  GNISTS++       +L++ PR+PLFGGW+T +T+GY +P  +++++
Sbjct: 286 PPRAHSIYYRDEIGNISTSHLWSDSKKTQLEVEPRFPLFGGWQTTFTIGYGLPLQDFVFN 345

Query: 590 SGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTK 411
           S  +  L + +     +++ +++L+ K++LPEGS  I +++P+  T+    + +++LD  
Sbjct: 346 SDGKRFLNI-TFGSPVEEILIEKLIVKVVLPEGSKDIDISVPFP-TKQEQEVKYSHLDIS 403

Query: 410 GRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIH 231
           GRPV+   K +++  H   FQ+ Y F  + +L+EP++++   + LF+  I+Y+R D SI 
Sbjct: 404 GRPVVVLEKLDVIPEHNLYFQVYYRFNNISLLREPMMLITGFFLLFMACIVYMRTDMSIS 463

Query: 230 KS 225
           K+
Sbjct: 464 KN 465


>04_03_0588 +
           17595299-17596151,17597519-17597665,17598562-17598837,
           17599108-17599805
          Length = 657

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
 Frame = -3

Query: 764 SASDVYYRDTNGNISTSNMKVKKDSVELDLR--PRYPLFGGWR------THY------TL 627
           +A  +YY  +  ++S  +  VK  ++ LD     +   FG  R      TH       T 
Sbjct: 427 AAGALYYLHSAASVSVLHRDVKSSNILLDSNYTAKVSDFGASRLIPNDQTHVFTNIQGTF 486

Query: 626 GYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 447
           GY  P Y   YH+G+   L  +S  + F  + ++ L+ K  + +  TG K N+       
Sbjct: 487 GYLDPEY---YHTGH---LNEKSDVYSFGVVLLELLLRKQPIFDDGTGTKKNL------- 533

Query: 446 PDSLHFTYLDTKGRPVISFIKKNIVENHIQD 354
             S++F   + KG+P+   +   +++  I+D
Sbjct: 534 --SIYFLS-EIKGKPITEIVAPEVIKEAIED 561


>06_03_1230 +
           28575661-28575728,28575791-28575861,28575978-28576188,
           28576339-28576495
          Length = 168

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 360 PRFSNPLYIPTSADVAGTTFSCWLLI 283
           PRF   +YI   AD+    F CWL I
Sbjct: 13  PRFEITIYILCFADIEDEDFQCWLNI 38


>06_03_1222 -
           28521799-28521900,28521952-28522029,28522292-28524335,
           28525188-28525303
          Length = 779

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 572 LKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 447
           L    +  + D   + +LV   +L  GSTG+  NIP S+ +L
Sbjct: 265 LPSNDLQGVLDGSDILKLVKLTVLDLGSTGLSGNIPDSIGQL 306


>06_03_1214 + 28469848-28473048
          Length = 1066

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 572 LKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 447
           L    +  + D   + +LV   +L  GSTG+  NIP S+ +L
Sbjct: 268 LPNNDLQGVLDGSHIVKLVKLTVLDLGSTGLSGNIPDSIGQL 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,899,886
Number of Sequences: 37544
Number of extensions: 401287
Number of successful extensions: 876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)