Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h05
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...   211   4e-55
Z83111-5|CAB05531.1|  137|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    30   2.1  
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    28   8.5  
AF100305-8|AAC68919.1|  179|Caenorhabditis elegans Hypothetical ...    28   8.5  
AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score =  211 bits (516), Expect = 4e-55
 Identities = 94/186 (50%), Positives = 131/186 (70%)
 Frame = -3

Query: 770 PASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSYEYLYH 591
           PA A D+YYRD  GNISTS ++++ DSV++++RPR+PLFGGW+T Y +GYN+PS EYLY 
Sbjct: 268 PAQAKDIYYRDEIGNISTSAVRIRADSVDVEIRPRFPLFGGWKTSYVIGYNLPSEEYLYS 327

Query: 590 SGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTK 411
            GN+Y LK +  DH+F+D+ V++L TK++LPE    +K+  PY+V R P+ L  TYLDT 
Sbjct: 328 KGNQYALKTKLFDHVFNDIVVEKLRTKVLLPEHVKRVKVATPYAVDRRPEELKPTYLDTT 387

Query: 410 GRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIH 231
           GR V+   K+NIV +H Q F + Y F  + ML+EPLL   F ++LF  +I+Y R DF+I 
Sbjct: 388 GRLVLVLEKENIVPDHSQFFTVTYEFEFVDMLREPLLASAFFFSLFFVIIVYSRFDFTIS 447

Query: 230 KSEHKD 213
               KD
Sbjct: 448 SDPAKD 453


>Z83111-5|CAB05531.1|  137|Caenorhabditis elegans Hypothetical
           protein F57G8.7 protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/80 (31%), Positives = 34/80 (42%)
 Frame = -3

Query: 770 PASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSYEYLYH 591
           PA A DV+   T G+I     K+K  SVE       P  G W    + G  + S  Y Y 
Sbjct: 24  PAGAKDVHLPITIGDIKAITRKLKNGSVE-TWNVVGPNKGTWVD--SKGKKIDSSNYSYK 80

Query: 590 SGNEYLLKMRSIDHIFDDMQ 531
           +G   + K+   D  F D +
Sbjct: 81  AGTIVIKKVSKNDEGFYDYE 100


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 473 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQD 354
           N+PYS  R   S    + + KG+ +++ I+  ++EN+ +D
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKD 423


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 473 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQD 354
           N+PYS  R   S    + + KG+ +++ I+  ++EN+ +D
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKD 423


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 473 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQD 354
           N+PYS  R   S    + + KG+ +++ I+  ++EN+ +D
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKD 423


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 348 NPLYIPTSADVAGTTFSCWLLIYIVFVCYYLCKIRFFNS 232
           N + I  S +++   F  + L YI+   Y LC+  F++S
Sbjct: 269 NWVIIKVSKEISFNFFQTFRLAYILMFAYMLCRYPFYSS 307


>AF100305-8|AAC68919.1|  179|Caenorhabditis elegans Hypothetical
           protein W04B5.6 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 354 FSNPLYIPTSADVAGTTFSCWLLIYIVFVCYYL--CKIRFF 238
           FS  +++   +D A  +F C+  +  V+ C Y+  CK + F
Sbjct: 94  FSEVVFLKMGSDDAPISFLCFTSVLFVYACIYVKYCKTKNF 134


>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 354 FSNPLYIPTSADVAGTTFSCWLLIYIVFVCYYL--CKIRFF 238
           FS  +++   +D A  +F C+  +  V+ C Y+  CK + F
Sbjct: 94  FSEVVFLKMGSDDAPISFLCFTSVLFVYACIYVKYCKTKNF 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,351,467
Number of Sequences: 27780
Number of extensions: 407317
Number of successful extensions: 1024
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)