Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h05
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   9.6  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 10  CFICNQCNDDQQVY 51
           C++C+QC + + VY
Sbjct: 557 CWVCDQCEEYEYVY 570


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 642 NTLHTWLQCP 613
           NTLH W  CP
Sbjct: 468 NTLHHWHHCP 477


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 746 YRDTNGNISTSNMKVKKDSV 687
           +RD  G  +T+ ++VK+D++
Sbjct: 136 HRDLPGKSTTTTVEVKRDTI 155


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 10  CFICNQCNDDQQVY 51
           C++C+QC + + V+
Sbjct: 467 CWVCDQCEEYEYVH 480


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 354 ILDMVLHNVFLYKRDYWTTF 413
           +LDM L  ++  + D+ TTF
Sbjct: 55  MLDMDLRGIYSNRTDFTTTF 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,219
Number of Sequences: 438
Number of extensions: 5079
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)