Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14h04
(180 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071712-1|AAL49334.1| 51|Drosophila melanogaster RH27094p pro... 83 4e-17
AE013599-3798|AAF47154.1| 51|Drosophila melanogaster CG3997-PA... 83 4e-17
AF012422-1|AAB65802.1| 51|Drosophila melanogaster ribosomal pr... 81 2e-16
DQ418878-1|ABD77422.1| 1765|Drosophila melanogaster echinus spli... 28 2.0
DQ418877-1|ABD77421.1| 1746|Drosophila melanogaster echinus spli... 28 2.0
AY576488-1|AAS86754.1| 1712|Drosophila melanogaster echinus prot... 28 2.0
AL031130-3|CAA20016.1| 1761|Drosophila melanogaster EG:EG0002.3 ... 28 2.0
AE014298-564|AAF45898.2| 1712|Drosophila melanogaster CG2904-PA ... 28 2.0
AY058683-1|AAL13912.1| 568|Drosophila melanogaster LD40177p pro... 26 6.1
AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulf... 26 6.1
AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA... 26 6.1
AE013599-2972|AAF57501.1| 568|Drosophila melanogaster CG11208-P... 26 6.1
BT003570-1|AAO39574.1| 614|Drosophila melanogaster LD45290p pro... 26 8.0
AY058496-1|AAL13725.1| 647|Drosophila melanogaster LD03170p pro... 26 8.0
AF255674-1|AAG18329.1| 647|Drosophila melanogaster rho guanine ... 26 8.0
AE014296-1222|AAN12050.1| 600|Drosophila melanogaster CG8606-PB... 26 8.0
AE014296-1221|AAF50584.1| 647|Drosophila melanogaster CG8606-PA... 26 8.0
>AY071712-1|AAL49334.1| 51|Drosophila melanogaster RH27094p
protein.
Length = 51
Score = 83.4 bits (197), Expect = 4e-17
Identities = 36/43 (83%), Positives = 41/43 (95%)
Frame = -2
Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRH 21
M+AHK+F IK+KLAKKLKQNR +PQWVR+RTGNTIRYNAKRRH
Sbjct: 1 MAAHKSFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRH 43
>AE013599-3798|AAF47154.1| 51|Drosophila melanogaster CG3997-PA
protein.
Length = 51
Score = 83.4 bits (197), Expect = 4e-17
Identities = 36/43 (83%), Positives = 41/43 (95%)
Frame = -2
Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRH 21
M+AHK+F IK+KLAKKLKQNR +PQWVR+RTGNTIRYNAKRRH
Sbjct: 1 MAAHKSFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRH 43
>AF012422-1|AAB65802.1| 51|Drosophila melanogaster ribosomal
protein 46 protein.
Length = 51
Score = 81.0 bits (191), Expect = 2e-16
Identities = 35/43 (81%), Positives = 40/43 (93%)
Frame = -2
Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRH 21
M+AHK+F IK+KLAKKLKQNR +PQWVR+ TGNTIRYNAKRRH
Sbjct: 1 MAAHKSFRIKQKLAKKLKQNRSVPQWVRLATGNTIRYNAKRRH 43
>DQ418878-1|ABD77422.1| 1765|Drosophila melanogaster echinus splice
form 3 protein.
Length = 1765
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = -2
Query: 122 KRKLAKKLKQNRPIPQWVRMRTGNT-----IRYNAKRRHLEKDQ 6
+R L +K + +P+ MR G+T +R N+K R LEK+Q
Sbjct: 776 RRILVEKGAETEAMPELKHMREGSTSSVKHVRQNSKDRTLEKEQ 819
>DQ418877-1|ABD77421.1| 1746|Drosophila melanogaster echinus splice
form 1 protein.
Length = 1746
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = -2
Query: 122 KRKLAKKLKQNRPIPQWVRMRTGNT-----IRYNAKRRHLEKDQ 6
+R L +K + +P+ MR G+T +R N+K R LEK+Q
Sbjct: 757 RRILVEKGAETEAMPELKHMREGSTSSVKHVRQNSKDRTLEKEQ 800
>AY576488-1|AAS86754.1| 1712|Drosophila melanogaster echinus
protein.
Length = 1712
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = -2
Query: 122 KRKLAKKLKQNRPIPQWVRMRTGNT-----IRYNAKRRHLEKDQ 6
+R L +K + +P+ MR G+T +R N+K R LEK+Q
Sbjct: 723 RRILVEKGAETEAMPELKHMREGSTSSVKHVRQNSKDRTLEKEQ 766
>AL031130-3|CAA20016.1| 1761|Drosophila melanogaster EG:EG0002.3
protein.
Length = 1761
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = -2
Query: 122 KRKLAKKLKQNRPIPQWVRMRTGNT-----IRYNAKRRHLEKDQ 6
+R L +K + +P+ MR G+T +R N+K R LEK+Q
Sbjct: 772 RRILVEKGAETEAMPELKHMREGSTSSVKHVRQNSKDRTLEKEQ 815
>AE014298-564|AAF45898.2| 1712|Drosophila melanogaster CG2904-PA
protein.
Length = 1712
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = -2
Query: 122 KRKLAKKLKQNRPIPQWVRMRTGNT-----IRYNAKRRHLEKDQ 6
+R L +K + +P+ MR G+T +R N+K R LEK+Q
Sbjct: 723 RRILVEKGAETEAMPELKHMREGSTSSVKHVRQNSKDRTLEKEQ 766
>AY058683-1|AAL13912.1| 568|Drosophila melanogaster LD40177p
protein.
Length = 568
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 119 RKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHLEK 12
++LA K KQNR Q + + T + Y A HL +
Sbjct: 341 KQLAVKCKQNRDTVQKMSLNTETPLNYYAVFHHLRE 376
>AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulfate
N-deacetylase/N-sulfotransferase homolog protein.
Length = 1048
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 140 HKTFIIKRKLAKKLKQNRPIPQWVR 66
H T ++K L KKL +RPIPQW++
Sbjct: 1020 HNTALVK--LLKKLG-SRPIPQWLK 1041
>AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA
protein.
Length = 1048
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 140 HKTFIIKRKLAKKLKQNRPIPQWVR 66
H T ++K L KKL +RPIPQW++
Sbjct: 1020 HNTALVK--LLKKLG-SRPIPQWLK 1041
>AE013599-2972|AAF57501.1| 568|Drosophila melanogaster CG11208-PA
protein.
Length = 568
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 119 RKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHLEK 12
++LA K KQNR Q + + T + Y A HL +
Sbjct: 341 KQLAVKCKQNRDTVQKMSLNTETPLNYYAVFHHLRE 376
>BT003570-1|AAO39574.1| 614|Drosophila melanogaster LD45290p
protein.
Length = 614
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 27 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFAL 122
P +V+ NS+ C +PL+ V L G F L
Sbjct: 282 PNTVVENSLECCCIFPLKKCKVYEMLPGNFKL 313
>AY058496-1|AAL13725.1| 647|Drosophila melanogaster LD03170p
protein.
Length = 647
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 27 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFAL 122
P +V+ NS+ C +PL+ V L G F L
Sbjct: 315 PNTVVENSLECCCIFPLKKCKVYEMLPGNFKL 346
>AF255674-1|AAG18329.1| 647|Drosophila melanogaster rho guanine
nucleotide exchangefactor 4 protein.
Length = 647
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 27 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFAL 122
P +V+ NS+ C +PL+ V L G F L
Sbjct: 315 PNTVVENSLECCCIFPLKKCKVYEMLPGNFKL 346
>AE014296-1222|AAN12050.1| 600|Drosophila melanogaster CG8606-PB,
isoform B protein.
Length = 600
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 27 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFAL 122
P +V+ NS+ C +PL+ V L G F L
Sbjct: 268 PNTVVENSLECCCIFPLKKCKVYEMLPGNFKL 299
>AE014296-1221|AAF50584.1| 647|Drosophila melanogaster CG8606-PA,
isoform A protein.
Length = 647
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 27 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFAL 122
P +V+ NS+ C +PL+ V L G F L
Sbjct: 315 PNTVVENSLECCCIFPLKKCKVYEMLPGNFKL 346
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,422,177
Number of Sequences: 53049
Number of extensions: 129647
Number of successful extensions: 344
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 24,988,368
effective HSP length: 40
effective length of database: 22,866,408
effective search space used: 434461752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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