Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h04
         (180 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    77   2e-15
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    77   2e-15
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    27   1.3  
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical ...    26   4.1  
AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine re...    25   7.1  
Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 34/43 (79%), Positives = 38/43 (88%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRH 21
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRH
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRH 43


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 34/43 (79%), Positives = 38/43 (88%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRH 21
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRH
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRH 43


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 3   ALVLLQVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQN 173
           A    Q  PLSVIS+S S   P+   + +++ ++     +   + +G + E  SC +
Sbjct: 15  AFTTSQYEPLSVISSSWSMWSPWSFCSNNLMIRVRACSTVRGYKCLGHNKEFQSCNS 71


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 137 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHLEK 12
           + FI++++L KKL++     +  R R    +RY  K+  L K
Sbjct: 718 RRFIMRKRLKKKLRKRYRGAKRRRKRQKYRLRYRKKKYQLRK 759


>AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.8 protein.
          Length = 165

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 122 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHLEK 12
           K+K+ K +++   +P   +  TGNT   N ++RH  K
Sbjct: 68  KKKVVKSVEKTARMPD--KPETGNTATGNPEKRHKRK 102


>AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine
           receptor, class t protein26 protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 79  GMGLFCFSFLANLRLIIN 132
           G+GL+C S L N+ L++N
Sbjct: 95  GLGLWCCSCLLNILLLVN 112


>Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.6 protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 43  RIVFPVRILTH*GMGLFCFSFLANLRL 123
           +++FP +++    +G+FCFSF   + +
Sbjct: 127 KLIFPDKVIYVIIIGVFCFSFFFTVNI 153


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical
           protein T01C4.1 protein.
          Length = 1484

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +3

Query: 15  LQVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRL 137
           LQV     +S   SC H   + NG     L   F  NN  +
Sbjct: 218 LQVDDTICVSKKFSCQHRIEILNGDTCGFLENAFQTNNTEM 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,372,192
Number of Sequences: 27780
Number of extensions: 67421
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)