Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14g22
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 181 4e-47
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 181 4e-47
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 27 1.4
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 26 3.2
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.6
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 5.6
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 25 5.6
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 24 9.8
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 181 bits (441), Expect = 4e-47
Identities = 82/134 (61%), Positives = 106/134 (79%)
Frame = -3
Query: 453 LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 274
+++++ Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57
Query: 273 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 94
G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116
Query: 93 GDIVTIGECRPLSK 52
GD+VT+G+CRPLSK
Sbjct: 117 GDVVTVGQCRPLSK 130
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 181 bits (441), Expect = 4e-47
Identities = 82/134 (61%), Positives = 106/134 (79%)
Frame = -3
Query: 453 LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 274
+++++ Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57
Query: 273 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 94
G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116
Query: 93 GDIVTIGECRPLSK 52
GD+VT+G+CRPLSK
Sbjct: 117 GDVVTVGQCRPLSK 130
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -3
Query: 237 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 58
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 57 S 55
S
Sbjct: 64 S 64
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 178 VKVIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTL 285
V + HDS+LH +FLN +D + T+E L
Sbjct: 24 VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 196 DHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 303
+H +H+ H L D + + DRN +EGT N T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 300 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 398
YP W+ +++ CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 5.6
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 417 FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 241
+ K T F N+ G K M K G+ A G T+ID P I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221
Query: 240 TGV 232
TGV
Sbjct: 222 TGV 224
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 387 RKGGMKRKDMRHHKNVGLGFKTPREAIEG 301
R G D++ +N+G+ F+TP + G
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQFFLG 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,417
Number of Sequences: 5004
Number of extensions: 37710
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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