Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14g22
(461 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical pr... 188 2e-48
Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 28 2.8
Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z79604-4|CAB60456.1| 598|Caenorhabditis elegans Hypothetical pr... 27 4.9
AL021497-6|CAA16408.1| 141|Caenorhabditis elegans Hypothetical ... 27 4.9
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 6.5
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 6.5
AL021497-5|CAA16399.1| 141|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical
protein F40F11.1 protein.
Length = 155
Score = 188 bits (457), Expect = 2e-48
Identities = 87/133 (65%), Positives = 104/133 (78%), Gaps = 3/133 (2%)
Frame = -3
Query: 441 MADQTEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 271
M++QTE+AF KQ TV LN K + +K R+ + VGLGFK PR+A+EGTYIDKKCP+
Sbjct: 1 MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60
Query: 270 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 91
GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+ H SP FRD+ G
Sbjct: 61 GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPG 120
Query: 90 DIVTIGECRPLSK 52
D+VTIGECRPLSK
Sbjct: 121 DLVTIGECRPLSK 133
>Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical
protein C27C12.4 protein.
Length = 450
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 229 SENEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 110
S+NED E+ DP LP + + E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 2.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 369 SSCHLSCSGKRWPVSETLSLSD 434
+SC++ CSG++W E S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 2.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 369 SSCHLSCSGKRWPVSETLSLSD 434
+SC++ CSG++W E S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032
>Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical
protein R06B9.1 protein.
Length = 423
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 357 ACPSSSCHLSCSGKRWPVSETLSLSDPP 440
AC S LS WP S TL L+ PP
Sbjct: 92 ACKDGSNELSAGDYVWPFSYTLPLNVPP 119
>Z79604-4|CAB60456.1| 598|Caenorhabditis elegans Hypothetical
protein ZK662.5 protein.
Length = 598
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 133 VRAFVALLQGRGDW*YCNDRRMQTFVQXQLD 41
+RAFV L++ DW Y RRMQ ++D
Sbjct: 250 LRAFVRLIRNNSDW-YARYRRMQLQHNGEMD 279
>AL021497-6|CAA16408.1| 141|Caenorhabditis elegans Hypothetical
protein Y51A2D.10 protein.
Length = 141
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 80 RSANADLCPKXVRFNVLKVSKGKGSK 3
R + LCPK V +V K + GKGSK
Sbjct: 91 RCNHVGLCPKRVTIHVPKNAVGKGSK 116
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 218 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 123
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 218 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 123
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 218 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 123
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>AL021497-5|CAA16399.1| 141|Caenorhabditis elegans Hypothetical
protein Y51A2D.9 protein.
Length = 141
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 62 LCPKXVRFNVLKVSKGKGSK 3
LCPK V +V K + GKGSK
Sbjct: 97 LCPKKVTIHVPKNAVGKGSK 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,721
Number of Sequences: 27780
Number of extensions: 219630
Number of successful extensions: 616
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -