Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14g21
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371     28   0.89 
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    27   2.1  
01_06_0552 + 30166699-30166797,30167094-30167562,30171536-301718...    27   2.7  
06_03_1040 + 27082978-27083086,27083574-27083632,27083759-270838...    26   4.8  
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396...    26   4.8  
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523...    25   8.3  

>05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371
          Length = 206

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 107 RVTLSA*EVCGCCCKNCATNNYP*CSTGNI 196
           +VT+SA   CGCCC N      P   T  +
Sbjct: 65  QVTVSAIGGCGCCCGNGKPRGIPSSKTNRV 94


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 146 NNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKEN 39
           N+N++  +PT+  D N+ KS   NI  V    C  N
Sbjct: 178 NDNKQDSRPTSSMDHNVTKSPGSNIPAVESGRCVVN 213


>01_06_0552 +
           30166699-30166797,30167094-30167562,30171536-30171879,
           30172006-30172302
          Length = 402

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 124 SRQRYTMVTLKNRFTKISHMFAS*CAKKICLASTIHKFYN 5
           SR+R      + R T+I+H F S     +   ST+H +Y+
Sbjct: 262 SRRRAVATAERQRATEIAHAFRSPLPYCVIRMSTMHVYYS 301


>06_03_1040 +
           27082978-27083086,27083574-27083632,27083759-27083833,
           27083908-27084024,27084207-27084277,27084432-27084732,
           27084949-27085238,27085779-27085833
          Length = 358

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 167 YSLHNFYNNNRKPLKPTTLHDGNIKKSVYENIT 69
           Y L NFY N+R+ +K  + +DG ++ +   N T
Sbjct: 133 YQLDNFYQNHRRYVK--SRNDGQLRDAAKANQT 163


>01_04_0083 -
           15838922-15839065,15839153-15839443,15839555-15839653,
           15839733-15839825,15839913-15840116,15840209-15840459,
           15841045-15841096,15841527-15841625,15842222-15842299
          Length = 436

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 117 NVTRW*H*KIGLRKYHICSQADVQRKYAWRARSTSFTI 4
           N+ +W H K+  R YH    ++V+RK+A   R+ ++ +
Sbjct: 138 NILQWNH-KLYKRVYHPKMISEVERKFAIDGRANNWNL 174


>04_03_0387 -
           15251816-15251905,15251999-15252069,15252098-15252323,
           15252344-15252496,15252570-15252656,15252745-15252948,
           15253038-15253159,15253354-15253507,15254329-15254434,
           15254507-15254617,15256468-15256622
          Length = 492

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 117 NVTRW*H*KIGLRKYHICSQADVQRKYAWRARSTSFTI 4
           N+ +W + KI +R YH     +V+RK+A   R+ S+ +
Sbjct: 194 NILKW-NDKIFIRIYHQKMITEVKRKFAIDGRAKSWLL 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,526,070
Number of Sequences: 37544
Number of extensions: 85248
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)