Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14g18
(563 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.6
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 6.5
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 6.5
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 6.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.6
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 21 8.6
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 45 GTYLFVVVFEDHRAVTLPAVVTVLHHR 125
G+Y ++F +V L +V + HHR
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 45 GTYLFVVVFEDHRAVTLPAVVTVLHHR 125
G+Y ++F +V L +V + HHR
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 45 GTYLFVVVFEDHRAVTLPAVVTVLHHR 125
G+Y ++F +V L +V + HHR
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 45 GTYLFVVVFEDHRAVTLPAVVTVLHHR 125
G+Y ++F +V L +V + HHR
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 45 GTYLFVVVFEDHRAVTLPAVVTVLHHR 125
G+Y ++F +V L +V + HHR
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 45 GTYLFVVVFEDHRAVTLPAVVTVLHHR 125
G+Y ++F +V L +V + HHR
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHR 284
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 6.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 330 FLLDIVVREGTSILQLLSSED---QPLLIGRDSL 422
FL+DIVV T I+Q ++E P LI + L
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYL 165
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 6.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 330 FLLDIVVREGTSILQLLSSED---QPLLIGRDSL 422
FL+DIVV T I+Q ++E P LI + L
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYL 165
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 6.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 330 FLLDIVVREGTSILQLLSSED---QPLLIGRDSL 422
FL+DIVV T I+Q ++E P LI + L
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYL 165
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 45 GTYLFVVVFEDHRAVTLPAVVTVLHHR 125
G+Y ++F +V L +V HHR
Sbjct: 326 GSYFNCIMFMVASSVVLTVLVLNFHHR 352
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 45 GTYLFVVVFEDHRAVTLPAVVTVLHHR 125
G+Y ++F +V L +V HHR
Sbjct: 326 GSYFNCIMFMVASSVVLTVLVLNFHHR 352
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +2
Query: 341 YCSPRGYVHPPAAFQRRSTSVDWEG 415
YC P G++ F ++ +VD G
Sbjct: 159 YCVPAGWIWGDQGFLKKLGAVDIAG 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,666
Number of Sequences: 438
Number of extensions: 2580
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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