Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14g17
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.1  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    28   1.5  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.5  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    26   6.0  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 74  YLFIGFQKFIYT-KIITLHIVPRISDITLXSYYSFFLKC 187
           Y+F+ F K +   KI   H +PR +D+      S+F+ C
Sbjct: 12  YVFLPFSKRVENLKIDVAHKIPRAADLEDEDVESYFISC 50


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 577 YGQQIPLPNII*RYNNV*TNPVCRWHIQNIKTINCKIYCL 458
           YGQ++P P ++   N   T+ V  W    + T   K  CL
Sbjct: 75  YGQKLPSPPVLKLKNATQTSIVLEWDPLQLSTARLKSLCL 114


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 62  LTPGYLFIGFQKFIYTKIITLHIVPRISDITLXSYYSFFLKCYH 193
           +TP Y  + F  F     + LH+   I   TL  ++ F + CYH
Sbjct: 32  MTPFYSILCFLSFF---ALLLHLPCSIYSHTLHFFHHFTIACYH 72


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 217 MYRKYNNEAPKIFNCVSINK 276
           +Y+KY  + P +F  +SINK
Sbjct: 75  VYKKYGKQLPFLFKVLSINK 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,381
Number of Sequences: 5004
Number of extensions: 39210
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)