Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14g17
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = +1

Query: 13  ISKQRGRTRTWNVTYVSNTGLFIYRLSKIYLHKNYYTSHCSSDKR 147
           ++ +  R   W V +  +     Y  + +  +   YT  CS++KR
Sbjct: 415 LTVENNRRNPWFVEFWEHHFQCRYPNASVTPYNKNYTKFCSTEKR 459


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 17  ANNGGGREHGM*HTYLTPGYLFIGFQKFIYTKIITLHIV 133
           A  GG R +   HTY  P      F + I    IT+  +
Sbjct: 600 AGGGGARSYVDPHTYEDPNQAVREFAREIDAGYITIEAI 638


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 266 ETQLNIFGASLLYFRYILDVFFLI 195
           ET  N+F  S+ +F  +LD + L+
Sbjct: 538 ETYCNLFSLSVDHFNAVLDQYPLM 561


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 266 ETQLNIFGASLLYFRYILDVFFLI 195
           ET  N+F  S+ +F  +LD + L+
Sbjct: 506 ETYCNLFSLSVDHFNAVLDQYPLM 529


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 64  NTGLFIYRLSKIYLHK 111
           N  LFIY LS   LH+
Sbjct: 121 NPNLFIYALSVAILHR 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,605
Number of Sequences: 438
Number of extensions: 3533
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)