Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14g14
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    27   3.4  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   4.5  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    26   5.9  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   7.8  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   7.8  

>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
 Frame = +2

Query: 398 LKQSWLSSISRDISLSN----WYLVMMCLINDSGTIISVISTLQISXXXXXXXXXXXXXX 565
           LK SWL    + +  S+    W  +  C++ D+   +  I+T+                 
Sbjct: 92  LKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRSIATIAFHLPTEMVFPGGFDDL 151

Query: 566 XVRILAHDETTNVAEFQLR 622
              ILA D+   + EFQ+R
Sbjct: 152 KKEILAFDKNAKLLEFQIR 170


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 299 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKIL 189
           +AA      +  +  Q  A  LIND+ PNK   L I+
Sbjct: 447 LAAYSKEAQLPGSIKQNIAQYLINDVVPNKDGDLSIV 483


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 172 ERAICWNRCKPTRPKLS*IESKRSTC*TFWGAFTTTRSKVI 50
           E   C N   P  P+++ +  + S     +G+ +TTRSK +
Sbjct: 172 ENESCLNNAAPGSPEVAVLSFRHSFHGRLFGSLSTTRSKPV 212


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 674 LLFETLFREFAQQSVSGSGV 615
           + F++  R+FA+QS+ GSGV
Sbjct: 358 IYFDSKTRKFAKQSLDGSGV 377


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 380 YHRYHLLKQSWLSSISRDISLS 445
           Y++  L K+SW  S+S +ISLS
Sbjct: 107 YYQEALRKKSWSRSLSNNISLS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,034
Number of Sequences: 5004
Number of extensions: 52645
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)