Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14g14
         (690 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF399513-1|AAK94998.1|  215|Homo sapiens olfactory receptor prot...    31   3.9  
AB065844-1|BAC06062.1|  310|Homo sapiens seven transmembrane hel...    31   3.9  
AB065656-1|BAC05882.1|  310|Homo sapiens seven transmembrane hel...    31   3.9  
DQ232881-1|ABB18374.1|  868|Homo sapiens LIN41 protein.                30   8.9  

>AF399513-1|AAK94998.1|  215|Homo sapiens olfactory receptor
           protein.
          Length = 215

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 344 FFVFATCCCQC------PYHRYHLLKQSWLSSISRDISLSNWYLVMMCLINDSGTIISV 502
           +F     CC+C       Y+RY  +    L S+     +SNW  VM  +I  + ++ISV
Sbjct: 35  YFFVGLVCCECFLLGSMAYNRYIAICNPLLYSVVMSQKVSNWLGVMPYVIGFTSSLISV 93


>AB065844-1|BAC06062.1|  310|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 310

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 344 FFVFATCCCQC------PYHRYHLLKQSWLSSISRDISLSNWYLVMMCLINDSGTIISV 502
           +F     CC+C       Y+RY  +    L S+     +SNW  VM  +I  + ++ISV
Sbjct: 102 YFFVGLVCCECFLLGSMAYNRYIAICNPLLYSVVMSQKVSNWLGVMPYVIGFTSSLISV 160


>AB065656-1|BAC05882.1|  310|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 310

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 344 FFVFATCCCQC------PYHRYHLLKQSWLSSISRDISLSNWYLVMMCLINDSGTIISV 502
           +F     CC+C       Y+RY  +    L S+     +SNW  VM  +I  + ++ISV
Sbjct: 102 YFFVGLVCCECFLLGSMAYNRYIAICNPLLYSVVMSQKVSNWLGVMPYVIGFTSSLISV 160


>DQ232881-1|ABB18374.1|  868|Homo sapiens LIN41 protein.
          Length = 868

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 360 VANTKKPPQQT--AGKPFGANANGGRRHVANHQH 265
           VA   +PP +   AG P GA  +   RH A+H H
Sbjct: 124 VATADEPPPKNGRAGAPAGAGGHSNHRHHAHHAH 157


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,218,689
Number of Sequences: 237096
Number of extensions: 1838720
Number of successful extensions: 4735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4727
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)