Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14g14
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      28   5.5  
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    28   7.2  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    28   7.2  

>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
            F26A3.8 protein.
          Length = 1601

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 686  PYDRLLFETLFREFAQQSVSGSGVGTPQRLSFHHEQVFGRKTLIC 552
            PYDR   + L REF    +    VG       H+   +G  + +C
Sbjct: 980  PYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRVC 1024


>AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical
           protein Y26D4A.2 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 380 YHRYHLLKQSWLSSISRDISLSNWYLVMMCLINDSGTIISVISTLQI 520
           Y  YH LKQ+W ++   ++  ++ Y V+   +N+  T++  I   Q+
Sbjct: 273 YLPYHRLKQAWNANF-YNVKTTDKYYVVNTYVNEEATLVRSIPGCQM 318


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 686  PYDRLLFETLFREFAQQSVSGSGVGTPQRLSFHHEQVFGRKTLIC 552
            PYDR   + L REF    +    VG       H+   +G  + +C
Sbjct: 980  PYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRVC 1024


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 230 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 111
           ND    K    +I   +++GARNL++    N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 230 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 111
           ND    K    +I   +++GARNL++    N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003,425
Number of Sequences: 27780
Number of extensions: 312972
Number of successful extensions: 961
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)