Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14g11
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 288 3e-78
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 281 5e-76
11_01_0710 - 5830475-5830595,5831498-5834124 31 1.1
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 30 1.9
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.3
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.7
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 288 bits (707), Expect = 3e-78
Identities = 136/219 (62%), Positives = 163/219 (74%)
Frame = -1
Query: 720 KRRLTFMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 541
+++ MEIQ+NGGTI DKV + + EK IPVD+VF +DEMID I +R
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTR 235
Query: 540 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 361
W +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K
Sbjct: 236 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----K 290
Query: 360 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 181
G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL
Sbjct: 291 SGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQ 349
Query: 180 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 64
T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 350 TSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 808 IEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHI 704
I+ +KM +Y SVVRVI HTQ++ +K +QKKAH+
Sbjct: 146 IQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHL 181
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 281 bits (689), Expect = 5e-76
Identities = 132/211 (62%), Positives = 159/211 (75%)
Frame = -1
Query: 720 KRRLTFMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 541
+++ MEIQ+NGGTI DKV + + EK IPVD+VF +DEMID I +R
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTR 235
Query: 540 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 361
W +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K
Sbjct: 236 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----K 290
Query: 360 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 181
G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL
Sbjct: 291 SGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQ 349
Query: 180 TKRAALEKINLKFIDTSSKFGHGRFQTPADK 88
T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 350 TSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/36 (52%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = -3
Query: 808 IEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHI 704
I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH+
Sbjct: 146 IQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHL 181
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 587 QSIISSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISI 703
+S+ISSW + TG S CS+ + + PLS S+
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSL 688
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 809 NRKRFQEDDPLL*CCKSHCPHSNEAV--KTATKEG 711
N +RF +DPLL CC H P+ A +TAT G
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGATCDRTATVWG 331
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 321 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 226
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -1
Query: 465 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 316
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 315 SEKSITPMGGFPHYGEVNN 259
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,985,251
Number of Sequences: 37544
Number of extensions: 495465
Number of successful extensions: 1160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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