Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14g11
(813 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p pro... 400 e-111
AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal pr... 400 e-111
AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE... 400 e-111
AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB... 400 e-111
AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA... 400 e-111
>BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p
protein.
Length = 465
Score = 400 bits (984), Expect = e-111
Identities = 185/226 (81%), Positives = 199/226 (88%)
Frame = -1
Query: 720 KRRLTFMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 541
+++ MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSR
Sbjct: 186 QKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSR 245
Query: 540 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 361
WHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 246 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 305
Query: 360 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 181
DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL H
Sbjct: 306 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 365
Query: 180 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 43
TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 366 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411
Score = 65.3 bits (152), Expect = 9e-11
Identities = 26/36 (72%), Positives = 34/36 (94%)
Frame = -3
Query: 811 SIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 704
SIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+
Sbjct: 156 SIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHV 191
>AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal
protein L3 protein.
Length = 416
Score = 400 bits (984), Expect = e-111
Identities = 185/226 (81%), Positives = 199/226 (88%)
Frame = -1
Query: 720 KRRLTFMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 541
+++ MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSR
Sbjct: 175 QKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSR 234
Query: 540 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 361
WHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 235 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 294
Query: 360 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 181
DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL H
Sbjct: 295 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 354
Query: 180 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 43
TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 355 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400
Score = 65.3 bits (152), Expect = 9e-11
Identities = 26/36 (72%), Positives = 34/36 (94%)
Frame = -3
Query: 811 SIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 704
SIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+
Sbjct: 145 SIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHV 180
>AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE,
isoform E protein.
Length = 403
Score = 400 bits (984), Expect = e-111
Identities = 185/226 (81%), Positives = 199/226 (88%)
Frame = -1
Query: 720 KRRLTFMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 541
+++ MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSR
Sbjct: 162 QKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSR 221
Query: 540 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 361
WHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 222 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 281
Query: 360 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 181
DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL H
Sbjct: 282 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 341
Query: 180 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 43
TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 342 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387
Score = 65.3 bits (152), Expect = 9e-11
Identities = 26/36 (72%), Positives = 34/36 (94%)
Frame = -3
Query: 811 SIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 704
SIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+
Sbjct: 132 SIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHV 167
>AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB,
isoform B protein.
Length = 403
Score = 400 bits (984), Expect = e-111
Identities = 185/226 (81%), Positives = 199/226 (88%)
Frame = -1
Query: 720 KRRLTFMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 541
+++ MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSR
Sbjct: 162 QKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSR 221
Query: 540 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 361
WHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 222 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 281
Query: 360 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 181
DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL H
Sbjct: 282 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 341
Query: 180 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 43
TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 342 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387
Score = 65.3 bits (152), Expect = 9e-11
Identities = 26/36 (72%), Positives = 34/36 (94%)
Frame = -3
Query: 811 SIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 704
SIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+
Sbjct: 132 SIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHV 167
>AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA,
isoform A protein.
Length = 416
Score = 400 bits (984), Expect = e-111
Identities = 185/226 (81%), Positives = 199/226 (88%)
Frame = -1
Query: 720 KRRLTFMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 541
+++ MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSR
Sbjct: 175 QKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSR 234
Query: 540 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 361
WHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 235 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 294
Query: 360 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 181
DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL H
Sbjct: 295 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 354
Query: 180 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 43
TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 355 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400
Score = 65.3 bits (152), Expect = 9e-11
Identities = 26/36 (72%), Positives = 34/36 (94%)
Frame = -3
Query: 811 SIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 704
SIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+
Sbjct: 145 SIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHV 180
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,660,508
Number of Sequences: 53049
Number of extensions: 826140
Number of successful extensions: 2422
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2422
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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