Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14g06
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0115 - 11248021-11248101,11249017-11249118 83 3e-17
05_03_0661 - 16726958-16726966,16727133-16727234 57 2e-09
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 28 0.89
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560... 27 2.7
05_07_0043 - 27284814-27285190,27285287-27285488,27285576-272856... 26 4.8
04_01_0588 + 7657510-7657992,7658397-7658843 26 4.8
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 26 4.8
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 26 4.8
08_02_0368 - 16312961-16314588,16314794-16314890,16316360-163164... 25 8.3
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 25 8.3
03_01_0651 - 4767836-4767856,4768111-4768457,4768582-4768751,476... 25 8.3
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 83.0 bits (196), Expect = 3e-17
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKG*PEASQATRE 45
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST GMDPKFLRNQR+ +K ++ +A E
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSGEAESE 59
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 56.8 bits (131), Expect = 2e-09
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST G +
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 158 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 75
+KP K R L + +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482
>02_05_0773 +
31654985-31655365,31655486-31655610,31655712-31656026,
31656145-31656314,31656408-31656751
Length = 444
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 182 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFC 84
++AHRNG+K T H++ G+ P+ + + + C
Sbjct: 121 QRAHRNGVKVLALTDHDTMAGV-PEAIESAKQC 152
>05_07_0043 -
27284814-27285190,27285287-27285488,27285576-27285650,
27285743-27285816,27285909-27285996,27286081-27286203,
27288374-27288580,27288631-27288636
Length = 383
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 150 KEDQARIHPWHGSKIFKESKVLQEGVT*SQPSNSRGRLREKLPEKQRP 7
+++Q R K+ + K QE + S+PS+S+ +K+P P
Sbjct: 182 EKEQERKRQRDQKKLQDQRKAEQEALYGSKPSSSKSHSTKKVPRNSTP 229
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -1
Query: 268 ASVLSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*G 98
+ VL S S+W ++S+W I + + T + +M Q RP L W ++ G
Sbjct: 214 SGVLPSSSEWRSSSSRWDLGEITRRM-DTLDM-QMGGGQQRRPPAEDGLGWASSWFG 268
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 6/26 (23%)
Frame = +2
Query: 74 TPSCKT------FDSLKILDPCQGWI 133
+P+C+T F+S+K+L PC+ W+
Sbjct: 1447 SPNCRTEKLYSYFESIKLLFPCEQWM 1472
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 89 TFDSLKILDPCQGWIRAWSSLAF*Y-HFCELCGFGYDLYDSL 211
TF L ++ CQGW + ++ L+ Y G+ YD +
Sbjct: 280 TFQGLALIIRCQGWRQLFAGLSLNYVKVVPSVAIGFTTYDMM 321
>08_02_0368 -
16312961-16314588,16314794-16314890,16316360-16316489,
16316605-16316657
Length = 635
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 47 RELLGWLQVTPSCKTFDSLKILDPCQGWIR 136
R + W V PSCK F ++LD C +R
Sbjct: 269 RRVRRWFHV-PSCKGFLRRRLLDACYVLVR 297
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/34 (23%), Positives = 17/34 (50%)
Frame = +2
Query: 56 LGWLQVTPSCKTFDSLKILDPCQGWIRAWSSLAF 157
+GW+++ K + LDP + W W ++ +
Sbjct: 216 VGWIELNEYLKPYGLFFPLDPGKAWGHYWRNVCY 249
>03_01_0651 -
4767836-4767856,4768111-4768457,4768582-4768751,
4768848-4769162,4769758-4769882,4770743-4771036
Length = 423
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 179 KAHRNGIKKPRKTRHESTLGMDPKFLRNQRF 87
+AHRNG+K T H++ G+ RF
Sbjct: 93 RAHRNGVKVLALTDHDTMAGIPEAVSAAHRF 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,884,831
Number of Sequences: 37544
Number of extensions: 119343
Number of successful extensions: 423
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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