Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14g03
(261 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 85 7e-18
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 30 0.20
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 28 0.79
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 28 1.1
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 28 1.1
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 27 1.4
AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical ... 27 1.4
Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical pr... 27 2.4
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 27 2.4
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 27 2.4
Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z73971-2|CAA98252.1| 273|Caenorhabditis elegans Hypothetical pr... 26 3.2
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical... 25 5.6
Z74032-6|CAA98468.2| 234|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 25 7.4
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 25 7.4
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 25 7.4
AL022716-3|CAA18771.1| 272|Caenorhabditis elegans Hypothetical ... 25 7.4
Z49910-4|CAA90122.2| 173|Caenorhabditis elegans Hypothetical pr... 25 9.8
U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate recep... 25 9.8
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 25 9.8
AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic gl... 25 9.8
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 85.0 bits (201), Expect = 7e-18
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = -1
Query: 165 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYA 25
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CFRE A
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQA 47
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 30.3 bits (65), Expect = 0.20
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 82 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 231
M A S PR+ + + N + +LNC S+T ++ ++P+ WRT
Sbjct: 93 MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA-WRT 141
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 28.3 bits (60), Expect = 0.79
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 106 MPILLQQAWLNPQVRFEHMQTVLQRV 29
+ +L Q W +P++RF+H+ LQ +
Sbjct: 80 LDLLFSQIWHDPRLRFDHLTNCLQNL 105
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 105 CRSCSNRHGLIRKYGLNICRQC 40
CR C R+ + +G++ICR C
Sbjct: 47 CRVCERRYDGSQHFGIDICRAC 68
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 105 CRSCSNRHGLIRKYGLNICRQC 40
CR C R+ + +G++ICR C
Sbjct: 57 CRVCERRYDGSQHFGIDICRAC 78
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 160 AHFKKLNCFSLTSNKLDTPSRWRT 231
A F +LNC ++T+N+ P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277
>AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.10 protein.
Length = 250
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 82 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 231
M A S PR+ + + + + +LNC S+T ++ ++P+ WRT
Sbjct: 93 MKTAAASTCPRTCGLCCQTDAYSCPNVAYPRLNCASITLSQCNSPA-WRT 141
>Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical
protein F35E8.9 protein.
Length = 248
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 82 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 231
M A S PR+ + + + + +LNC S+T+++ +P+ WRT
Sbjct: 93 MKTAAQSTCPRTCGLCCQTSAYSCPNVAYPRLNCASITASQCISPA-WRT 141
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 171 LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 64
LK A W+ +P+R G +R C SC ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 63 RTCGLSHACWSRIGMTEILVRICEGEN 143
R C ++H C+S + E + CEGEN
Sbjct: 40 RVCPVAH-CYSSLTAPEPMTSTCEGEN 65
>Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical
protein K10D6.1 protein.
Length = 457
Score = 26.2 bits (55), Expect = 3.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 106 MPILLQQAWLNPQVRFEHMQTVLQRV 29
M I + + WL+P ++F+H+ Q +
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNL 126
>Z73971-2|CAA98252.1| 273|Caenorhabditis elegans Hypothetical
protein C50H2.4 protein.
Length = 273
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 11 ILCHGAYSLKHCLHMFKPYLRIKPCLLEQDRHDRDPCPY 127
IL HG Y KH + + Y+RI+ ++ +++ CP+
Sbjct: 85 ILAHGFYDEKHHTFLQQLYVRIEEDKNGKNVKEQEYCPF 123
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 118 RISVMPILLQQAWLNPQVRFEHMQTVLQRVCS 23
RI P++L+Q WL R E R+CS
Sbjct: 27 RIPKRPLILRQRWLTAIGRTEETVVSQLRICS 58
>AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical
protein Y41C4A.9 protein.
Length = 577
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 208 LICCSLARNNLIS*N-GPRKYLVFSPSQIRTRISVMPILLQQAWLNPQVRFEHMQT 44
L+C L +++ + G +L+ S + T + I+LQQ W N Q+ F H+ +
Sbjct: 282 LVCSPLGLRMILNGDDGNEAHLISSINM--TIVDRTDIMLQQNWENLQLIFSHLHS 335
>Z74032-6|CAA98468.2| 234|Caenorhabditis elegans Hypothetical
protein F35B12.8 protein.
Length = 234
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 174 IKLFLANEQQIRYTFKMANLNER 242
+ +FL E ++ Y+F + NLNE+
Sbjct: 63 LTIFLEQEVEMAYSFGLENLNEQ 85
>Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical
protein C35A5.4 protein.
Length = 427
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 109 PRSLSVSARVRIPN-ICV-AHFKKLNCFS 189
PR SV+A +R+PN +C+ + + N +S
Sbjct: 113 PRQTSVNAAIRMPNSVCIQVYHRPYNAYS 141
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical
protein ZK455.1 protein.
Length = 887
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 191 SEKQFNFLKWATQIFGILTLADTDKDLGH 105
+ ++FNFLKW ++ F L + + H
Sbjct: 148 NRERFNFLKWGSKAFDNLLIVPPGSGIVH 176
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 112 SVMPILLQQAWLNPQVRFEH 53
S M IL Q W +P + FEH
Sbjct: 131 STMHILFSQIWHDPGLSFEH 150
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 112 SVMPILLQQAWLNPQVRFEH 53
S M IL Q W +P + FEH
Sbjct: 131 STMHILFSQIWHDPGLSFEH 150
>AL022716-3|CAA18771.1| 272|Caenorhabditis elegans Hypothetical
protein C24F3.2 protein.
Length = 272
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 57 SNRTCGLSHACWSRIGMTEILVRICEGENTKYLR 158
S TC +SH C +++G C G N K++R
Sbjct: 223 SGATCSVSHTCGAKLGTFIASGSKCNGCN-KFVR 255
>Z49910-4|CAA90122.2| 173|Caenorhabditis elegans Hypothetical
protein F44G4.6 protein.
Length = 173
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 241 LSFKFAILKVYLICCSLARN 182
+SF F + V LICC RN
Sbjct: 40 MSFAFIYILVSLICCVTTRN 59
>U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 5 protein.
Length = 932
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 1 SFLNPMSWSILSEALSAYVQTVL 69
SFLNP+SW I + ++ + L
Sbjct: 560 SFLNPLSWQIWTAIATSIITVTL 582
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 117 GSRSCRSCSNRHG-LIRKYGLNICRQC 40
GSR+ R G LI + LN+CRQC
Sbjct: 326 GSRTPALSRVREGVLIAELDLNLCRQC 352
>AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic
glutamate receptor GLR-5 protein.
Length = 425
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 1 SFLNPMSWSILSEALSAYVQTVL 69
SFLNP+SW I + ++ + L
Sbjct: 120 SFLNPLSWQIWTAIATSIITVTL 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,145,595
Number of Sequences: 27780
Number of extensions: 115862
Number of successful extensions: 334
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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