Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f23
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   3.8  

>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
            catalytic subunit|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
 Frame = -1

Query: 220  INYISYFSSLNFVYLL*IA*NYLLKKY--------TTH-FLKYLSIDIDGFSLSSWCLEP 68
            +N+    S++++++LL ++ N+L+KKY        T H  ++YLS D D + ++      
Sbjct: 850  VNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTVHDEVRYLSSDKDKYRVAFALQVA 909

Query: 67   QMVPNSFSCLSL 32
             +   +F C  L
Sbjct: 910  NLWTRAFFCQRL 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,923
Number of Sequences: 5004
Number of extensions: 35689
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)