Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f23
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm rece...    28   8.3  

>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -3

Query: 164 VKLLT*KIYYSFPEIFVY*YRWIFTFFMV---LRASNGAKFVFMSVVTSFLYY 15
           V +L   IY+ FP +FV  +  +  FF++   L A N +K   ++V   F++Y
Sbjct: 11  VAILLVLIYHLFPTLFVNGFLGVDIFFVISGFLMAQNLSKSKLVTVQDFFIFY 63


>AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 84 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 197 LIKFCLLVVDSVKLLT*KIYYSFPEIFVY*YRWIFT 90
           +++FC + V  + +L+    Y F  IF + Y W+F+
Sbjct: 93  ILQFCTMYVTMLIILSVHFIYRFVAIFHHRYLWMFS 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,586,317
Number of Sequences: 27780
Number of extensions: 182343
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)