Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f22
(601 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q0N3Z7 Cluster: BRO-B; n=13; Nucleopolyhedrovirus|Rep: ... 191 9e-48
UniRef50_Q8QLL0 Cluster: BRO-b; n=2; Nucleopolyhedrovirus|Rep: B... 187 2e-46
UniRef50_Q287M2 Cluster: BRO-A; n=1; Agrotis segetum nucleopolyh... 185 6e-46
UniRef50_Q99GY7 Cluster: Bro; n=27; root|Rep: Bro - Helicoverpa ... 180 2e-44
UniRef50_Q4KT25 Cluster: BRO-A; n=3; root|Rep: BRO-A - Chrysodei... 180 3e-44
UniRef50_O55569 Cluster: P20; n=5; Nucleopolyhedrovirus|Rep: P20... 124 2e-27
UniRef50_A4KX99 Cluster: Bro6; n=1; Heliothis virescens ascoviru... 60 5e-08
UniRef50_Q6VZI7 Cluster: CNPV160 N1R/p28-like protein; n=11; Avi... 55 1e-06
UniRef50_Q6VZH8 Cluster: CNPV169 N1R/p28-like protein; n=2; Cana... 52 1e-05
UniRef50_Q6VZC0 Cluster: CNPV227 N1R/p28-like protein; n=3; Cana... 51 2e-05
UniRef50_O10320 Cluster: Putative uncharacterized protein; n=1; ... 49 1e-04
UniRef50_Q5UP83 Cluster: Putative KilA-N domain-containing prote... 42 0.015
UniRef50_Q9TM34 Cluster: DNA-directed RNA polymerase subunit bet... 38 0.18
UniRef50_Q89KW2 Cluster: Bll4788 protein; n=7; Bradyrhizobiaceae... 37 0.42
UniRef50_Q89ZN5 Cluster: RNA-directed DNA polymerase; n=5; Bacte... 36 0.55
UniRef50_Q629R8 Cluster: Polysaccharide deacetylase family prote... 36 0.73
UniRef50_A5V9T8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.73
UniRef50_A5DCD7 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_Q3SVF1 Cluster: Putative uncharacterized protein; n=2; ... 33 3.9
UniRef50_Q54843 Cluster: Emm64 protein precursor; n=5; Streptoco... 33 3.9
UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit bet... 33 3.9
UniRef50_Q4H4B6 Cluster: Scribble1; n=16; Euteleostomi|Rep: Scri... 33 5.1
UniRef50_Q21P37 Cluster: Putative uncharacterized protein; n=1; ... 33 5.1
UniRef50_A5N6C8 Cluster: Putative uncharacterized protein; n=1; ... 33 5.1
UniRef50_A1RXB8 Cluster: Type II secretion system protein E; n=1... 33 5.1
UniRef50_Q826G9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.8
UniRef50_Q81ZL2 Cluster: SMC protein; n=4; Coxiella burnetii|Rep... 33 6.8
UniRef50_Q1GFM7 Cluster: Putative uncharacterized protein; n=1; ... 33 6.8
UniRef50_Q0LH86 Cluster: Band 7 protein; n=1; Herpetosiphon aura... 33 6.8
UniRef50_Q4G3A5 Cluster: DNA-directed RNA polymerase subunit bet... 33 6.8
UniRef50_Q1NM38 Cluster: Response regulator receiver precursor; ... 32 9.0
UniRef50_Q7Q8A9 Cluster: ENSANGP00000011098; n=2; Culicidae|Rep:... 32 9.0
UniRef50_Q4FWX4 Cluster: Putative uncharacterized protein; n=3; ... 32 9.0
>UniRef50_Q0N3Z7 Cluster: BRO-B; n=13; Nucleopolyhedrovirus|Rep:
BRO-B - Clanis bilineata nucleopolyhedrosis virus
Length = 339
Score = 191 bits (466), Expect = 9e-48
Identities = 99/179 (55%), Positives = 128/179 (71%), Gaps = 9/179 (5%)
Frame = -1
Query: 601 DDLTQKLTVXNADLAEANRSLILFANEMIVARRDAETAR-------QDCENARRETAQLA 443
D+ Q LT L E N+ ++ FAN +IVA + TA Q+ A + +A
Sbjct: 154 DEKIQNLTTV---LIETNQQVVKFANALIVANENLITANNNLNVANQNLHEANQTIGHMA 210
Query: 442 NRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLG--SNDVIFS 269
NRMADIAQDVIAKPS+PQL HSLAVC +G +++AFLRPQKRSL RSL RL D++F
Sbjct: 211 NRMADIAQDVIAKPSDPQLLHSLAVCSLGGDQYAFLRPQKRSLQRSLNRLSVDERDIVFK 270
Query: 268 SDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNS 92
SDYVPN++NVLNKVKE +PR+KFKAKHN+ITLL++ TRE+L+ + ++MT+RQIAR S
Sbjct: 271 SDYVPNAVNVLNKVKETLPRDKFKAKHNKITLLDNLTREQLVEAVQASMTERQIARQFS 329
>UniRef50_Q8QLL0 Cluster: BRO-b; n=2; Nucleopolyhedrovirus|Rep:
BRO-b - Mamestra configurata NPV-A
Length = 372
Score = 187 bits (455), Expect = 2e-46
Identities = 98/168 (58%), Positives = 129/168 (76%), Gaps = 2/168 (1%)
Frame = -1
Query: 601 DDLTQKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA 422
D+ +KLTV +L EAN++L + AN+ ++ A AR++TA+LANRMADIA
Sbjct: 209 DEENKKLTV---NLQEANQNLTV-ANQGLLQ------AFNIVNEARKDTAELANRMADIA 258
Query: 421 QDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLG--SNDVIFSSDYVPNS 248
QDVIAKP+NPQL HSLAVC +G +++AF+RPQKRSL RSL RL D+++ SDYVPN
Sbjct: 259 QDVIAKPANPQLLHSLAVCSMGGDQYAFVRPQKRSLKRSLDRLAVEERDIVYKSDYVPNG 318
Query: 247 MNVLNKVKEAIPRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIA 104
+NVLNKVKEA+P++KF A+HN+ITLL D T+EEL++VI STMT RQ+A
Sbjct: 319 VNVLNKVKEALPKDKFTARHNKITLLNDMTKEELVDVISSTMTTRQLA 366
>UniRef50_Q287M2 Cluster: BRO-A; n=1; Agrotis segetum
nucleopolyhedrovirus|Rep: BRO-A - Agrotis segetum
nuclear polyhedrosis virus (AsNPV)
Length = 324
Score = 185 bits (451), Expect = 6e-46
Identities = 87/163 (53%), Positives = 129/163 (79%), Gaps = 10/163 (6%)
Frame = -1
Query: 562 LAEANRSLILFANEMIVARRDAET-------ARQDCENARRETAQLANRMADIAQDVIAK 404
L+++N ++ + E+I+A+++++ AR+D E ARR+ L+ R+ADIAQDVI K
Sbjct: 154 LSKSNEMILKMSQELILAKQNSDAMIQEMIVARRDAETARRDMVVLSTRIADIAQDVITK 213
Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRS---LKRLGSNDVIFSSDYVPNSMNVLN 233
PSNPQL H+LAVC++GNNEFAFLRPQKRSL RS L+R G D+++++DYVPNSMNVLN
Sbjct: 214 PSNPQLLHTLAVCEIGNNEFAFLRPQKRSLQRSLNNLRRNGQADLVYANDYVPNSMNVLN 273
Query: 232 KVKEAIPRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIA 104
KVKE +P++KFKAK+N+ITLL++Y +++L+ +I ++T RQ++
Sbjct: 274 KVKEHVPKDKFKAKNNKITLLKEYDKQKLIEIINKSLTARQLS 316
>UniRef50_Q99GY7 Cluster: Bro; n=27; root|Rep: Bro - Helicoverpa
armigera nucleopolyhedrovirus G4
Length = 527
Score = 180 bits (438), Expect = 2e-44
Identities = 87/143 (60%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
Frame = -1
Query: 526 NEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNE 347
+ + VA + A +AR+ETA++A RMADIAQDVIAKPS+PQL HSLAVC +G ++
Sbjct: 365 HNLAVANQGLLKAFDVVNDARKETAEIAKRMADIAQDVIAKPSDPQLLHSLAVCSMGGDQ 424
Query: 346 FAFLRPQKRSLGRSLKRLG--SNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITL 173
+AFLRPQKRSL RSL RL D+++ SDYVPNSMNVLNKVKE +P+ K+KA+HNRITL
Sbjct: 425 YAFLRPQKRSLKRSLDRLSVDEKDIVYKSDYVPNSMNVLNKVKERLPKEKYKARHNRITL 484
Query: 172 LEDYTREELMNVIGSTMTDRQIA 104
ED TRE+L+ I ST++ RQ+A
Sbjct: 485 HEDLTREDLLQAIESTVSSRQVA 507
>UniRef50_Q4KT25 Cluster: BRO-A; n=3; root|Rep: BRO-A - Chrysodeixis
chalcites nucleopolyhedrovirus
Length = 517
Score = 180 bits (437), Expect = 3e-44
Identities = 91/167 (54%), Positives = 122/167 (73%), Gaps = 2/167 (1%)
Frame = -1
Query: 598 DLTQKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
+L+ L N L +AN L+ FA+ ++ + A + EN LANRMADIAQ
Sbjct: 348 ELSVSLRTSNEKLQDANDKLMYFASALVDSNNGLMKANERIEN-------LANRMADIAQ 400
Query: 418 DVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSND--VIFSSDYVPNSM 245
DVIAKPS+PQL HSLAVC +G ++AF+RPQKRSL RSL RL ++ ++F S+YVPN+M
Sbjct: 401 DVIAKPSDPQLLHSLAVCALGEGQYAFVRPQKRSLKRSLDRLSIDESQILFKSNYVPNAM 460
Query: 244 NVLNKVKEAIPRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIA 104
NVLNKVKE++P++KF A+HN+ITLLED TRE+L+ I S+MT+RQ+A
Sbjct: 461 NVLNKVKESLPKDKFTARHNKITLLEDLTREDLVEAINSSMTERQVA 507
>UniRef50_O55569 Cluster: P20; n=5; Nucleopolyhedrovirus|Rep: P20 -
Leucania separata nuclear polyhedrosis virus (LsNPV)
Length = 179
Score = 124 bits (299), Expect = 2e-27
Identities = 61/142 (42%), Positives = 94/142 (66%), Gaps = 7/142 (4%)
Frame = -1
Query: 523 EMIVARRDAETAR--QDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGNN 350
++I+ +DA+ A A + L+ R+ DI QDV+ KP N QL H+LAVC++ N
Sbjct: 36 DVIIQHKDAQIAELLNAILLANSQCMSLSKRLVDIVQDVVVKPQNCQLLHALAVCELSCN 95
Query: 349 EFAFLRPQKRSLGRSLKRLGSND-----VIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 185
+FAFLR Q RSL RS+KRL + +I+ S+YVPNS+N+LNK+KE +P++KF A+HN
Sbjct: 96 KFAFLRTQLRSLKRSIKRLQRAEQHEPTIIYQSEYVPNSINILNKIKEQLPKDKFTARHN 155
Query: 184 RITLLEDYTREELMNVIGSTMT 119
+I L++D ++ L+ ++ T
Sbjct: 156 KIQLVDDCGKDTLVKLLSELKT 177
>UniRef50_A4KX99 Cluster: Bro6; n=1; Heliothis virescens ascovirus
3e|Rep: Bro6 - Heliothis virescens ascovirus 3e
Length = 153
Score = 59.7 bits (138), Expect = 5e-08
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = -1
Query: 601 DDLTQKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA 422
D L + + + +AE N L +I + + D +ARR+T +LANR+ADI
Sbjct: 34 DSLKRMVCEKDKKIAELNDKLTSMTGHLIQSNASLVSVSNDLVSARRDTVKLANRIADIT 93
Query: 421 QDVIAKPSNPQLCHSLAVCD-VGNNEFAFLRPQKRSL 314
Q V+AKPS + HSL + + + + A R QKRS+
Sbjct: 94 QAVVAKPSVEECLHSLVMHSMISSRDTATNRSQKRSI 130
>UniRef50_Q6VZI7 Cluster: CNPV160 N1R/p28-like protein; n=11;
Avipoxvirus|Rep: CNPV160 N1R/p28-like protein -
Canarypox virus (CNPV)
Length = 396
Score = 55.2 bits (127), Expect = 1e-06
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Frame = -1
Query: 475 ENARRETAQLANRMADIAQ---DVIAKPSNPQLCHSLAVCDVGN--NEFAFLRPQKRSLG 311
E R+T +L + I + D + PS+P H L + N N F LR Q + L
Sbjct: 265 EKYDRDTLELKTELKKIEERLKDKVINPSSPDKLHRLVILQKKNDSNSFRTLRVQAKGLD 324
Query: 310 RSLKRLGSNDVIFSSDYVPNSMNVLNKVKE-AIPRNKFKAKHNRITL--LEDYTREELMN 140
R L ++ + +F + Y PN+++ N++KE + + + K +N TL LE+Y EL N
Sbjct: 325 RELDKVKRDYRVFFNAYEPNAVSCFNRLKERLLEQERVKINYNDFTLCDLENYGVRELYN 384
>UniRef50_Q6VZH8 Cluster: CNPV169 N1R/p28-like protein; n=2;
Canarypox virus|Rep: CNPV169 N1R/p28-like protein -
Canarypox virus (CNPV)
Length = 332
Score = 51.6 bits (118), Expect = 1e-05
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Frame = -1
Query: 505 RDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGN--NEFAFLR 332
RD + + + E +L R+ +D + P++P H L + N F LR
Sbjct: 198 RDTNELKSELREVKTELKKLEERL----KDKVINPTSPNKLHRLVILQNKRDPNSFKTLR 253
Query: 331 PQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKE-AIPRNKFKAKHNRITL--LEDY 161
Q L R L ++ + +F + Y PN+++ N++KE + + + K +N TL LE+Y
Sbjct: 254 LQAERLDRELDKVKRDYRVFFNAYEPNAVSCFNRLKERLLEQERVKINYNDFTLCDLENY 313
Query: 160 TREELMNVIGSTMTDRQIA 104
EL N + + R+ A
Sbjct: 314 GVRELYNDLNNLDLVRKYA 332
>UniRef50_Q6VZC0 Cluster: CNPV227 N1R/p28-like protein; n=3;
Canarypox virus|Rep: CNPV227 N1R/p28-like protein -
Canarypox virus (CNPV)
Length = 359
Score = 50.8 bits (116), Expect = 2e-05
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Frame = -1
Query: 475 ENARRETAQLANRMADIAQ---DVIAKPSNPQLCHSLAVCDVGN--NEFAFLRPQKRSLG 311
E R+T +L + I + D + PS+P H L + N F LR Q L
Sbjct: 228 EKYDRDTHELKTELKKIEERLKDKVINPSSPNKLHRLVILQNKRDPNSFKTLRLQAERLD 287
Query: 310 RSLKRLGSNDVIFSSDYVPNSMNVLNKVKE-AIPRNKFKAKHNRITL--LEDYTREELMN 140
R L ++ + +F + Y PN+++ N++KE + + + K +N TL LE+Y EL N
Sbjct: 288 RELDKVKRDYKVFFNAYEPNAVSCFNRLKERLLEQERVKINYNDFTLCDLENYGVRELCN 347
>UniRef50_O10320 Cluster: Putative uncharacterized protein; n=1;
Orgyia pseudotsugata MNPV|Rep: Putative uncharacterized
protein - Orgyia pseudotsugata multicapsid polyhedrosis
virus (OpMNPV)
Length = 60
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3
Query: 294 NRFRLRPSDRFCGRRNANSLLPTSHTARLWHSCG 395
N F+LR S+RFCGR NANSLLP++HTA + G
Sbjct: 8 NLFKLRRSERFCGRTNANSLLPSAHTASACSTAG 41
>UniRef50_Q5UP83 Cluster: Putative KilA-N domain-containing protein
L4; n=1; Acanthamoeba polyphaga mimivirus|Rep: Putative
KilA-N domain-containing protein L4 - Mimivirus
Length = 454
Score = 41.5 bits (93), Expect = 0.015
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -1
Query: 334 RPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFK--AKHNRITLLEDY 161
+ + +L R K +VI + Y PNSM++ N+ K+ + + K K K ++ L EDY
Sbjct: 374 KSKSSALSRYYKSHPKGNVILTIKYTPNSMHLWNECKDDLHKKKIKLSKKSSKFNLREDY 433
Query: 160 TREELMNVI 134
T ++L+ I
Sbjct: 434 TEKQLIKDI 442
>UniRef50_Q9TM34 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Cyanidium caldarium|Rep: DNA-directed RNA
polymerase subunit beta'' - Cyanidium caldarium
Length = 1269
Score = 37.9 bits (84), Expect = 0.18
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 1/144 (0%)
Frame = -1
Query: 535 LFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVG 356
L E +++ A D ++ L R+ D+AQD+I + + + + + ++
Sbjct: 179 LNVTEYLISSYGARKGLVDTSLRTADSGYLTRRLVDVAQDIIVREIDCKTNNGITFSNIQ 238
Query: 355 NNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYV-PNSMNVLNKVKEAIPRNKFKAKHNRI 179
NNE + KR +GR L N + + N++ N +KE N K K
Sbjct: 239 NNEKIIIPLYKRLIGRILADDVKNPITPQVNIASKNTLITGNLIKEFKKNNIQKIKLRSP 298
Query: 178 TLLEDYTREELMNVIGSTMTDRQI 107
+ Y R G++++D ++
Sbjct: 299 LTCQSY-RSICQKCYGASLSDGKL 321
>UniRef50_Q89KW2 Cluster: Bll4788 protein; n=7;
Bradyrhizobiaceae|Rep: Bll4788 protein - Bradyrhizobium
japonicum
Length = 332
Score = 36.7 bits (81), Expect = 0.42
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = -1
Query: 472 NARRETAQLANRMADIAQDVIAKPSNPQLCHS---LAVCDVGNNEFAFLRPQKRSLGRSL 302
NA ++ A A A + + ++ P NPQL ++ L + D GN A L P K ++GR+L
Sbjct: 72 NAPKDEALAAGEAAYMPKGMVTVPFNPQLINTGSKLVLIDAGNGA-ANLEPSKGAVGRTL 130
Query: 301 KRLGSNDV 278
+ L + V
Sbjct: 131 QNLAAAGV 138
>UniRef50_Q89ZN5 Cluster: RNA-directed DNA polymerase; n=5;
Bacteroides|Rep: RNA-directed DNA polymerase -
Bacteroides thetaiotaomicron
Length = 377
Score = 36.3 bits (80), Expect = 0.55
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 289 SNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLLEDYTREELMNV 137
++D+ FS D P VL +VKE I KF+ H + L +Y R+ + V
Sbjct: 249 ADDLTFSGDVFPKDQ-VLARVKEIIREEKFEPNHQKTRFLNEYDRKIITGV 298
>UniRef50_Q629R8 Cluster: Polysaccharide deacetylase family protein;
n=20; Burkholderiaceae|Rep: Polysaccharide deacetylase
family protein - Burkholderia mallei (Pseudomonas
mallei)
Length = 395
Score = 35.9 bits (79), Expect = 0.73
Identities = 22/62 (35%), Positives = 26/62 (41%)
Frame = +3
Query: 327 CGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVSASR 506
CG + TS T +CG G T C AMR+ A R A + C A SR
Sbjct: 15 CGTCGTSGTCGTSGTCGTCGTCGTCGTCGT-CGTCAMRVTGAAARRPATAMRCAAKRTSR 73
Query: 507 RA 512
RA
Sbjct: 74 RA 75
>UniRef50_A5V9T8 Cluster: Putative uncharacterized protein; n=1;
Sphingomonas wittichii RW1|Rep: Putative uncharacterized
protein - Sphingomonas wittichii RW1
Length = 261
Score = 35.9 bits (79), Expect = 0.73
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 430 PPCGWPAAPFRGARFRNLAEPFQRRVEPQSFR 525
PPCGW +PFRG +++A RR P + R
Sbjct: 42 PPCGWSPSPFRGGSQKDMAMTDARRFAPATAR 73
>UniRef50_A5DCD7 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 373
Score = 33.9 bits (74), Expect = 2.9
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -1
Query: 511 ARRDAETARQDCENARRETAQLANRMADIAQ 419
ARR+AE AR++ E ARRE + A R A+ A+
Sbjct: 165 ARREAERARREAERARREAEERARREAERAR 195
>UniRef50_Q3SVF1 Cluster: Putative uncharacterized protein; n=2;
Nitrobacter|Rep: Putative uncharacterized protein -
Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Length = 496
Score = 33.5 bits (73), Expect = 3.9
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 583 LTVXNADLAEANRSLILFANEMI--VARRDAETARQDCENARRETAQLANRMADIAQD 416
L +A LA+ + + + +A+RDAETAR+D E+AR ++ A A D
Sbjct: 266 LAAISARLAQTEQQIEQMTQSLTAEIAKRDAETARRDTESARNSEETAKSKQAAPADD 323
>UniRef50_Q54843 Cluster: Emm64 protein precursor; n=5;
Streptococcus|Rep: Emm64 protein precursor -
Streptococcus pyogenes
Length = 528
Score = 33.5 bits (73), Expect = 3.9
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = -1
Query: 580 TVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKP 401
T AD+ ++ +L L AN RR+AE + R + QL N ADI Q +I K
Sbjct: 37 TEVKADVVDSEIALELEANRADELRREAERLEDEATRVRELSDQLDNVRADI-QSLIPKL 95
Query: 400 SN 395
SN
Sbjct: 96 SN 97
>UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Cryptomonadaceae|Rep: DNA-directed RNA
polymerase subunit beta'' - Guillardia theta
(Cryptomonas phi)
Length = 1286
Score = 33.5 bits (73), Expect = 3.9
Identities = 22/105 (20%), Positives = 46/105 (43%)
Frame = -1
Query: 535 LFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVG 356
L E +++ A D ++ L R+ D+AQD+I + + + + D+
Sbjct: 178 LTVTEYLISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIIREIDCGTQRGIVLRDMV 237
Query: 355 NNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKE 221
+N + + R +GR V+F + Y+PN +V+ + +
Sbjct: 238 DNNQILVSLKNRLIGR---------VLFETLYLPNDASVIGHINQ 273
>UniRef50_Q4H4B6 Cluster: Scribble1; n=16; Euteleostomi|Rep:
Scribble1 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 1724
Score = 33.1 bits (72), Expect = 5.1
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = -1
Query: 430 DIAQDVIAK-PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVP 254
DI+++ I++ P N + C SL + D N L P + R L L NDV S +P
Sbjct: 88 DISRNDISEIPENIKFCQSLEIADFSGNPLTRL-PDGFTQLRGLAHLSLNDVSLQS--LP 144
Query: 253 NSM-NVLNKVKEAIPRNKFKAKHNRITLL 170
N + N+ N V + N K+ + ++ L
Sbjct: 145 NDIGNLSNLVTLELRENLLKSLPSSLSFL 173
>UniRef50_Q21P37 Cluster: Putative uncharacterized protein; n=1;
Saccharophagus degradans 2-40|Rep: Putative
uncharacterized protein - Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024)
Length = 397
Score = 33.1 bits (72), Expect = 5.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 455 RFAARVFAILPSRFSVASSHNHFVGKQNERSVGFRQICVGHRQFLRQI 598
RF VF I+ FSV +GK+ E ++ +C RQFL I
Sbjct: 310 RFNRAVFDIMVLSFSVEEVRGLAIGKEAEIESAYKNLCSNDRQFLASI 357
>UniRef50_A5N6C8 Cluster: Putative uncharacterized protein; n=1;
Clostridium kluyveri DSM 555|Rep: Putative
uncharacterized protein - Clostridium kluyveri DSM 555
Length = 505
Score = 33.1 bits (72), Expect = 5.1
Identities = 18/75 (24%), Positives = 38/75 (50%)
Frame = -1
Query: 370 VCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAK 191
+ D+ NN+F+FL+ + + L + K+L + D+I D + + + L + I N
Sbjct: 33 ILDISNNDFSFLKDKDKKLADAFKKLVTEDLI--KDPMISRIYDLKALDIIISTNNKFNM 90
Query: 190 HNRITLLEDYTREEL 146
H+ T+L+ ++
Sbjct: 91 HDLFTMLDQLIENDM 105
>UniRef50_A1RXB8 Cluster: Type II secretion system protein E; n=1;
Thermofilum pendens Hrk 5|Rep: Type II secretion system
protein E - Thermofilum pendens (strain Hrk 5)
Length = 671
Score = 33.1 bits (72), Expect = 5.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 319 SLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLLEDYTR 155
SL R++KRL S + S Y+P+ L + +P KF + I +EDY +
Sbjct: 391 SLDRAVKRLTSPPMNVSPSYIPSLNIALLSERTILPDGKFARRVKHIWEIEDYEK 445
>UniRef50_Q826G9 Cluster: Putative uncharacterized protein; n=1;
Streptomyces avermitilis|Rep: Putative uncharacterized
protein - Streptomyces avermitilis
Length = 1399
Score = 32.7 bits (71), Expect = 6.8
Identities = 25/62 (40%), Positives = 31/62 (50%)
Frame = -1
Query: 583 LTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAK 404
LT A AEA R+ FA + A R+AE AR ARRE A+ AQD+ A
Sbjct: 826 LTDAWARTAEAERTAESFAGQAATAAREAEQARAGAVVARREAEATAS-----AQDLPAD 880
Query: 403 PS 398
P+
Sbjct: 881 PA 882
>UniRef50_Q81ZL2 Cluster: SMC protein; n=4; Coxiella burnetii|Rep:
SMC protein - Coxiella burnetii
Length = 1169
Score = 32.7 bits (71), Expect = 6.8
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -1
Query: 595 LTQKLTVXNADLAEANRSLILFANEMIVARRDA-ETARQDCENARRETAQLANRMADI 425
L+ + + NA+L+++ L A E I +RRDA +T R++ + RRE L R A +
Sbjct: 441 LSSQSELLNAELSDSQSKLQSLA-ETIASRRDANQTTREELQTQRRELQALEARAASL 497
>UniRef50_Q1GFM7 Cluster: Putative uncharacterized protein; n=1;
Silicibacter sp. TM1040|Rep: Putative uncharacterized
protein - Silicibacter sp. (strain TM1040)
Length = 97
Score = 32.7 bits (71), Expect = 6.8
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -1
Query: 601 DDLTQKLTVXNADLAEANRSLILFANEMIVARRDA--ETARQDCENARRETAQLANRMAD 428
D++ ++ V +D+AE ++S+ A + + RDA ETAR + AQ++ + D
Sbjct: 11 DEIIAQMDVLRSDIAELSKSVSHLAKDRVGKARDAARETARDQAQTVADGAAQMSRQAED 70
>UniRef50_Q0LH86 Cluster: Band 7 protein; n=1; Herpetosiphon
aurantiacus ATCC 23779|Rep: Band 7 protein -
Herpetosiphon aurantiacus ATCC 23779
Length = 744
Score = 32.7 bits (71), Expect = 6.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -1
Query: 601 DDLTQKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA 422
D +TQ AE R+ I ++ +ARR+A T+++ + R ++ R AD+
Sbjct: 221 DQMTQTEIAKRNATAEQERNTIERQKQLEIARRNASTSQEQNDIERSSELEITRRNADVD 280
Query: 421 QD 416
Q+
Sbjct: 281 QE 282
>UniRef50_Q4G3A5 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Emiliania huxleyi|Rep: DNA-directed RNA
polymerase subunit beta'' - Emiliania huxleyi
Length = 1267
Score = 32.7 bits (71), Expect = 6.8
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = -1
Query: 535 LFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVG 356
L E I++ A D ++ L R+ D+AQD+I + S+ L ++
Sbjct: 175 LTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIVRESDCGTTEGLWATELA 234
Query: 355 NNEFAFLR 332
+N F LR
Sbjct: 235 SNNFLNLR 242
>UniRef50_Q1NM38 Cluster: Response regulator receiver precursor;
n=2; delta proteobacterium MLMS-1|Rep: Response
regulator receiver precursor - delta proteobacterium
MLMS-1
Length = 1295
Score = 32.3 bits (70), Expect = 9.0
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -1
Query: 589 QKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQ-LAN 440
++L V N +L E +RSL E+ ARR+ ET +D E + R ++ LAN
Sbjct: 524 EELRVSNEELEERSRSLAEKNRELDRARRELETKARDLETSGRYKSEFLAN 574
>UniRef50_Q7Q8A9 Cluster: ENSANGP00000011098; n=2; Culicidae|Rep:
ENSANGP00000011098 - Anopheles gambiae str. PEST
Length = 1813
Score = 32.3 bits (70), Expect = 9.0
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = -1
Query: 595 LTQKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQD 416
L K+T N + A S L ++ + +D E R+E +L NR++D+ ++
Sbjct: 965 LEDKITRVNTTMKTAESSKSLLEIQLKAEKEKHTGTERDLEKVRKEKTKLDNRISDLEKE 1024
Query: 415 VIAKPSNPQL 386
+ N +L
Sbjct: 1025 LQLSKKNAEL 1034
>UniRef50_Q4FWX4 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 3212
Score = 32.3 bits (70), Expect = 9.0
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -1
Query: 568 ADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSN-P 392
ADLA A A + ARRD+ A + E RE A+LA +AD + A +
Sbjct: 2908 ADLAAARLHSSELAQTLGRARRDSAEAARTLETEAREKAKLAEELADTRAQLRAVNNELA 2967
Query: 391 QLCHSLA 371
+C S+A
Sbjct: 2968 SICASIA 2974
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,535,014
Number of Sequences: 1657284
Number of extensions: 10364256
Number of successful extensions: 35694
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 34460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35658
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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