Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f22
(601 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.16
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 33 0.16
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 32 0.36
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 32 0.36
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 3.3
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 29 3.3
Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical ... 28 4.4
Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cycl... 27 7.7
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = -1
Query: 598 DLTQKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
DL +++ A + ANR + F+NE+ A+R AE ++ +N + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 418 DV 413
+
Sbjct: 1362 SI 1363
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = -1
Query: 598 DLTQKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
DL +++ A + ANR + F+NE+ A+R AE ++ +N + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 418 DV 413
+
Sbjct: 1362 SI 1363
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = -1
Query: 598 DLTQKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
DL +++ A + ANR + F+NE+ A+R AE ++ +N + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 418 DV 413
+
Sbjct: 1362 SI 1363
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.9 bits (69), Expect = 0.36
Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Frame = -1
Query: 589 QKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA--QD 416
Q+L +LAE L NE+ + + +D + AR ET Q++ R+ ++ D
Sbjct: 2926 QRLQELERNLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREETDQISKRIDEVRLFVD 2985
Query: 415 VIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVL 236
+ + L L + + + + + +L R+++ + +SD+ P S + L
Sbjct: 2986 DVNDAAARLLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAAVRNAASDFGPTSEHFL 3045
Query: 235 NKVKEAIPRNKFKAKHNRITLLEDYTREE 149
N+ +P + +K N + + T E+
Sbjct: 3046 NQ-SVTLPWQRAISKSNLLPYYIEQTSEK 3073
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.9 bits (69), Expect = 0.36
Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Frame = -1
Query: 589 QKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA--QD 416
Q+L +LAE L NE+ + + +D + AR ET Q++ R+ ++ D
Sbjct: 2926 QRLQELERNLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREETDQISKRIDEVRLFVD 2985
Query: 415 VIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVL 236
+ + L L + + + + + +L R+++ + +SD+ P S + L
Sbjct: 2986 DVNDAAARLLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAAVRNAASDFGPTSEHFL 3045
Query: 235 NKVKEAIPRNKFKAKHNRITLLEDYTREE 149
N+ +P + +K N + + T E+
Sbjct: 3046 NQ-SVTLPWQRAISKSNLLPYYIEQTSEK 3073
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 31.9 bits (69), Expect = 0.36
Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Frame = -1
Query: 589 QKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA--QD 416
Q+L +LAE L NE+ + + +D + AR ET Q++ R+ ++ D
Sbjct: 2926 QRLQELERNLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREETDQISKRIDEVRLFVD 2985
Query: 415 VIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVL 236
+ + L L + + + + + +L R+++ + +SD+ P S + L
Sbjct: 2986 DVNDAAARLLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAAVRNAASDFGPTSEHFL 3045
Query: 235 NKVKEAIPRNKFKAKHNRITLLEDYTREE 149
N+ +P + +K N + + T E+
Sbjct: 3046 NQ-SVTLPWQRAISKSNLLPYYIEQTSEK 3073
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -1
Query: 208 NKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVK 53
N + + LL YT EEL+ V G + D QIA +R VVK
Sbjct: 523 NYDQKRRQNFGLLRYYTLEELIEVFGLLLPDVQIAMRRGVRRENMPVSTVVK 574
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -1
Query: 601 DDLTQKLTVXNADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA 422
D+ +K A++ ++ R A E R E + + E +RE LA + DIA
Sbjct: 1464 DEWRRKCEALVAEVEQSQRETRAAATETFRLRNQLEESGEQTEAVKRENKALAQELKDIA 1523
Query: 421 QDV 413
+
Sbjct: 1524 DQL 1526
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 303 RLRPSDRFCGRRNANSLLPTSHTARLWHSCG 395
RL+PS CG RN L P + A ++ S G
Sbjct: 53 RLKPSSEECGLRNTQPLAPITDIAVIFPSLG 83
>Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical
protein W07G4.2 protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/87 (31%), Positives = 37/87 (42%)
Frame = -1
Query: 472 NARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRL 293
N R T ++ VI S+ C A +GN+ F LG S ++L
Sbjct: 45 NDRNSTTNTLTSYENVQNSVICNFSDIN-CRLAAGMRLGNHIFEMAA----LLGMS-RQL 98
Query: 292 GSNDVIFSSDYVPNSMNVLNKVKEAIP 212
+ F D +N+LNKVKEAIP
Sbjct: 99 HRKSLFFVED--KTYLNMLNKVKEAIP 123
>AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical
protein F09G2.4 protein.
Length = 843
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = -1
Query: 511 ARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQ 389
A RDAE R E ARR+ AQ AN D D IA P P+
Sbjct: 410 AERDAEETRLRMERARRQ-AQ-ANESDDSDDDDIAAPIVPR 448
>Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical
protein R05D11.8 protein.
Length = 566
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 373 AVCDVGNNEFAFLRPQKRSLGRSLKRLGSN-DVIFSSDYVPNSMNVLNKVKEAIP 212
+V D N + PQK + GRS K+ +N + +F P+ + + K P
Sbjct: 111 SVPDSSRNRSVAVSPQKSAKGRSPKKFATNVEKLFEHHSTPSKLTLAKKQSRQSP 165
>Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical
protein F09F3.2 protein.
Length = 323
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 396 LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAV 494
L+G+ IT+CA+SA+ + A+S + C +
Sbjct: 131 LIGIPITTCAISAVLFITLAISVLSLIAGCSCI 163
>Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical
protein R01E6.1 protein.
Length = 1014
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 601 DDLTQKLTVXNADLAEANRSLILFANEMIVA 509
D+L Q + + ADLA+A + NEM+ A
Sbjct: 776 DELEQMVAIRTADLADAQMQTMRLLNEMLPA 806
>AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1017
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 601 DDLTQKLTVXNADLAEANRSLILFANEMIVA 509
D+L Q + + ADLA+A + NEM+ A
Sbjct: 779 DELEQMVAIRTADLADAQMQTMRLLNEMLPA 809
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,460
Number of Sequences: 27780
Number of extensions: 243395
Number of successful extensions: 737
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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