Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f21
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   134   5e-33
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   129   2e-31
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   0.60 
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    28   0.79 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   1.0  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   4.2  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   5.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.3  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   7.3  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    24   9.7  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  134 bits (325), Expect = 5e-33
 Identities = 66/99 (66%), Positives = 76/99 (76%)
 Frame = -2

Query: 402 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 223
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 222 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYE 106
            +T+FGGG+STGFALIYD+ +  KKFEP +RL R G  E
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAE 98



 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 83  QRKERKNRMKKVRGT 39
           QRK+RKNR KKV GT
Sbjct: 107 QRKQRKNRGKKVFGT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  129 bits (311), Expect = 2e-31
 Identities = 60/96 (62%), Positives = 73/96 (76%)
 Frame = -2

Query: 402 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 223
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 222 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHG 115
            +T++GGG++TGFALIYD ++  KKFEP +RL R G
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95



 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 83  QRKERKNRMKKVRGT 39
           QRK+RKNR KKV GT
Sbjct: 107 QRKQRKNRGKKVFGT 121


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 367 FASANSRCSFTHFELFSII 423
           F+S  SRCSFT FE+ SI+
Sbjct: 776 FSSVISRCSFTDFEINSIL 794


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 31/91 (34%), Positives = 43/91 (47%)
 Frame = -1

Query: 337 ADGLRCLTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRS 158
           A G    +SR    Q+DRD  E R+N +   R S   R++D  RR      R D R+ R 
Sbjct: 14  AQGRNYESSRSRGDQRDRDYREYRRNYRD-ERSS--RRYEDSQRRDYSPARRRD-RYERH 69

Query: 157 GQEVRTQAQVSSPRPVREEEAHAQTSVKNVR 65
            + VR +    SPR   E E + Q  +K+ R
Sbjct: 70  RESVREE----SPRRPVEHERNWQPELKHGR 96


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 285 EIREKLAKMYKVTPDVVFVFGFKTNFGG 202
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 27  FRFLGTTDLLHSVLTFFTLVCAWASSSRTGRGELTCAWV 143
           FRF     LL +VLT+F+      S S+   G L   W+
Sbjct: 495 FRFNRRLSLLFAVLTYFSTFIFLCSLSKILNGPLVPFWL 533


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +3

Query: 39  GTTDLLHSVLTFFTLVCAWASSSRTGRGELTCAWVRTSWP 158
           GT   L  +L    L C W        GE     +R+ WP
Sbjct: 129 GTWGSLWPILNRSVLACVWYGVQAWIGGECVVLMIRSIWP 168


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 203 PPKFVLKPNTNTTSGVTLYILASFS 277
           PPK  LKP+ +T+  ++ Y LA  S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 275 SRISVLLTVGFPGCKTSQTICLRANNL 355
           SRI  + ++G    K  Q++CLR N +
Sbjct: 48  SRIQSMASLGLERFKNLQSLCLRQNQI 74


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 63  VLTFFTLVCAWASSSRTGRGELTCAWVRTSWPDRVCRRSKR 185
           +L FF+ +   +S   TG G L   +V  ++P++  +  KR
Sbjct: 5   ILIFFSFIKLVSSLQYTGNGVLALDFVAKTFPNQENQLEKR 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,830
Number of Sequences: 5004
Number of extensions: 40789
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)