Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f21
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 143 7e-35
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 139 9e-34
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 131 3e-31
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 31 0.59
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 29 1.8
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.4
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 29 2.4
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 4.2
02_03_0347 - 17999780-18000592,18000656-18003019 27 7.3
12_02_0351 - 17829874-17830005,17830250-17830267,17830544-178306... 27 9.6
12_01_0407 - 3219980-3221278 27 9.6
11_06_0081 + 19886848-19888050,19888243-19888896 27 9.6
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 27 9.6
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 27 9.6
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 9.6
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 27 9.6
01_07_0042 + 40697153-40697407,40697479-40698081 27 9.6
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 143 bits (346), Expect = 7e-35
Identities = 66/101 (65%), Positives = 83/101 (82%), Gaps = 1/101 (0%)
Frame = -2
Query: 384 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 208
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 207 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRK 85
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RK
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRK 111
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 83 QRKERKNRMKKVRG 42
Q KERKNR KK+RG
Sbjct: 112 QMKERKNRAKKIRG 125
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 139 bits (337), Expect = 9e-34
Identities = 65/101 (64%), Positives = 82/101 (81%), Gaps = 1/101 (0%)
Frame = -2
Query: 384 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 208
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 207 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRK 85
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RK
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRK 111
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 83 QRKERKNRMKKVRG 42
Q KERKNR KK+RG
Sbjct: 112 QMKERKNRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 131 bits (316), Expect = 3e-31
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = -2
Query: 384 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 208
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 207 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 121
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 83 QRKERKNRMKKVRG 42
Q KERKNR KK+RG
Sbjct: 140 QMKERKNRAKKIRG 153
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 30.7 bits (66), Expect = 0.59
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = -1
Query: 172 RHTRSGQEVRTQAQVSSPRPVREEEAHAQTSVKNVRT 62
+H+ + RT++ SPR +++ +H Q+S+++V T
Sbjct: 224 KHSNGTKRSRTESNFPSPRMLKDVHSHFQSSIQHVST 260
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 253 LVHFGELLTDLGLADGWFSWM*DIANHLLARQQSVGHEFASANSR 387
LV FG+ +T+L ADG W +A+H + V F+ N+R
Sbjct: 5 LVLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 224 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 403
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 190 WIRFDLRHTRSGQEVRTQAQVSSPRPVREEEAHA 89
W R +R + G E T AQ+ PRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 275 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 403
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>02_03_0347 - 17999780-18000592,18000656-18003019
Length = 1058
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 310 WM*DIANHLLARQQSVGHEFASANSRCSFTHFELFSIIRRLHARVSAKTR 459
W+ D+AN ++ QQ +G S + S T F RR R +A TR
Sbjct: 105 WLDDVANLVMTAQQRLGAGGRSFAPKASGTATTGFMSSRRRARRAAAVTR 154
>12_02_0351 -
17829874-17830005,17830250-17830267,17830544-17830672,
17831037-17831336,17831447-17831675,17831762-17831989,
17832380-17832645
Length = 433
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 173 TTHSIWPRSSNPSTG*LATACTRRRGPRANQRKERK 66
T + R+ PSTG RR G R QR++R+
Sbjct: 11 TGGGVMTRAEEPSTGGGGAGGERRGGRRVEQRRDRR 46
>12_01_0407 - 3219980-3221278
Length = 432
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 96 ASSSRTGRGELTCAWVRTSWPDRVCR 173
A+ S++G+G+ AW R W D + +
Sbjct: 90 ATDSQSGKGKKGAAWQRMKWTDSMVK 115
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 155 ARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTV 301
++ VS +++ P PPP P TN + +Y+ + ++VL V
Sbjct: 252 SKPDVSQLRSPPPPPPPPPAAPAPTTNRKNHTGVYVGIGAAAVAVLAVV 300
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 218 RQTSEVASQLDSL*STTHSIWPRSSNPSTG*LATACTRRRGPRANQRKERKNRMKK 51
R + + AS S S+ S SS S+ ++ C RR PR ++ + R KK
Sbjct: 4 RSSPDPASSSPSASSSPSSPSSSSSEDSSSPMSMPCKRRARPRTDKSTGKAKRPKK 59
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -1
Query: 250 YSRCSVRIR-FQDKLRRWQVNWI 185
+ RC VR+ F KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -1
Query: 394 RNSDYSHSQIHDQ--QIVGAQADGLRCLTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRF 221
R+SD ++ + D+ Q VG +D R T + +QD+ E + + + R
Sbjct: 761 RSSDRTNQRDRDRNDQDVGRTSDERREKTHDREKDKQDKPKSENKNILDAKQLIDMIPRT 820
Query: 220 QDKLRRWQVNWIRFD 176
+++L + +NW +D
Sbjct: 821 KEELFAYDINWAIYD 835
>06_03_0785 -
24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 26.6 bits (56), Expect = 9.6
Identities = 25/102 (24%), Positives = 50/102 (49%)
Frame = -2
Query: 390 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 211
+++I +F+ R R+++V +L K E R K A+ + +V+ + G N
Sbjct: 169 SSSISIGEFVVGRQKEREELVHQLLEQS----DKPESRSKGARSTSL--EVITIVG---N 219
Query: 210 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRK 85
G GK+T LIY+ + F+ + + +++K R T++
Sbjct: 220 GGIGKTTLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKE 261
>01_07_0042 + 40697153-40697407,40697479-40698081
Length = 285
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 149 FLARSSVS*IKANPVDLPPPKFVLKPN-TNTTSGVTLYILAS 271
+ +SSV + + LPPP FV P +NT + + Y + S
Sbjct: 134 YRTQSSVRSVSSTCKPLPPPPFVRDPKFSNTRTTINSYAVVS 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,658
Number of Sequences: 37544
Number of extensions: 283165
Number of successful extensions: 794
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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