Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f21
         (460 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113512-1|AAM29517.1|  131|Drosophila melanogaster RE59324p pro...   193   1e-49
AE013599-3424|AAF46871.1|  131|Drosophila melanogaster CG3751-PA...   193   1e-49
AE013599-708|AAM68835.1|  149|Drosophila melanogaster CG30356-PA...    30   1.3  
AY060385-1|AAL25424.1|  194|Drosophila melanogaster LD28933p pro...    28   6.9  
AE014296-2575|AAF49581.1|  192|Drosophila melanogaster CG6151-PB...    28   6.9  
AE014296-2573|AAN11767.1|  194|Drosophila melanogaster CG6151-PA...    28   6.9  
BT001831-1|AAN71586.1|  332|Drosophila melanogaster RH47694p pro...    27   9.2  
AY075538-1|AAL68345.1|  332|Drosophila melanogaster RH09039p pro...    27   9.2  
AE013599-136|AAM68341.1|  332|Drosophila melanogaster CG14591-PB...    27   9.2  
AE013599-135|AAF57289.1|  332|Drosophila melanogaster CG14591-PA...    27   9.2  

>AY113512-1|AAM29517.1|  131|Drosophila melanogaster RE59324p
           protein.
          Length = 131

 Score =  193 bits (470), Expect = 1e-49
 Identities = 90/106 (84%), Positives = 98/106 (92%)
 Frame = -2

Query: 402 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 223
           MS  TATIRTRKFMTNRLLARKQMVCDVLHPG  +V+KTEIREKLA MYKVTPDVVF FG
Sbjct: 1   MSGTTATIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYKVTPDVVFAFG 60

Query: 222 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRK 85
           F+TNFGGG+STGFALIYDTLD AKKFEPK+RLARHGL+E+K+ TRK
Sbjct: 61  FRTNFGGGRSTGFALIYDTLDFAKKFEPKYRLARHGLFEQKKQTRK 106



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = -3

Query: 83  QRKERKNRMKKVRGT 39
           QRKER+NRMKKVRGT
Sbjct: 107 QRKERRNRMKKVRGT 121


>AE013599-3424|AAF46871.1|  131|Drosophila melanogaster CG3751-PA
           protein.
          Length = 131

 Score =  193 bits (470), Expect = 1e-49
 Identities = 90/106 (84%), Positives = 98/106 (92%)
 Frame = -2

Query: 402 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 223
           MS  TATIRTRKFMTNRLLARKQMVCDVLHPG  +V+KTEIREKLA MYKVTPDVVF FG
Sbjct: 1   MSGTTATIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYKVTPDVVFAFG 60

Query: 222 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRK 85
           F+TNFGGG+STGFALIYDTLD AKKFEPK+RLARHGL+E+K+ TRK
Sbjct: 61  FRTNFGGGRSTGFALIYDTLDFAKKFEPKYRLARHGLFEQKKQTRK 106



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = -3

Query: 83  QRKERKNRMKKVRGT 39
           QRKER+NRMKKVRGT
Sbjct: 107 QRKERRNRMKKVRGT 121


>AE013599-708|AAM68835.1|  149|Drosophila melanogaster CG30356-PA
           protein.
          Length = 149

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 232 RIRFQDKLRRWQVNWIRFDLRHTRSGQEVRTQAQ 131
           R  +  + R  +VNW+   LR + +G+E R QAQ
Sbjct: 90  RFNYTYRSRSRKVNWVLAQLRKSAAGEECRPQAQ 123


>AY060385-1|AAL25424.1|  194|Drosophila melanogaster LD28933p
           protein.
          Length = 194

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 246 PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKK 148
           P ++  FG  + FG G   G  ++Y  + L KK
Sbjct: 115 PPIILCFGLASLFGSGLIFGTGVVYGMMALGKK 147


>AE014296-2575|AAF49581.1|  192|Drosophila melanogaster CG6151-PB,
           isoform B protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 246 PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKK 148
           P ++  FG  + FG G   G  ++Y  + L KK
Sbjct: 115 PPIILCFGLASLFGSGLIFGTGVVYGMMALGKK 147


>AE014296-2573|AAN11767.1|  194|Drosophila melanogaster CG6151-PA,
           isoform A protein.
          Length = 194

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 246 PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKK 148
           P ++  FG  + FG G   G  ++Y  + L KK
Sbjct: 115 PPIILCFGLASLFGSGLIFGTGVVYGMMALGKK 147


>BT001831-1|AAN71586.1|  332|Drosophila melanogaster RH47694p
           protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 113 RPWRANLCLGSNFLARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRI 283
           R W   + L + F+     S  +  P+ LPPP  + KP++ T     L++L + S I
Sbjct: 30  RRWLETILLSALFIFIMHRSWQRLAPIKLPPPHEIQKPHSPT----RLFLLIALSMI 82


>AY075538-1|AAL68345.1|  332|Drosophila melanogaster RH09039p
           protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 113 RPWRANLCLGSNFLARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRI 283
           R W   + L + F+     S  +  P+ LPPP  + KP++ T     L++L + S I
Sbjct: 30  RRWLETILLSALFIFIMHRSWQRLAPIKLPPPHEIQKPHSPT----RLFLLIALSMI 82


>AE013599-136|AAM68341.1|  332|Drosophila melanogaster CG14591-PB,
           isoform B protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 113 RPWRANLCLGSNFLARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRI 283
           R W   + L + F+     S  +  P+ LPPP  + KP++ T     L++L + S I
Sbjct: 30  RRWLETILLSALFIFIMHRSWQRLAPIKLPPPHEIQKPHSPT----RLFLLIALSMI 82


>AE013599-135|AAF57289.1|  332|Drosophila melanogaster CG14591-PA,
           isoform A protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 113 RPWRANLCLGSNFLARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRI 283
           R W   + L + F+     S  +  P+ LPPP  + KP++ T     L++L + S I
Sbjct: 30  RRWLETILLSALFIFIMHRSWQRLAPIKLPPPHEIQKPHSPT----RLFLLIALSMI 82


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,923,660
Number of Sequences: 53049
Number of extensions: 467497
Number of successful extensions: 1336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1518217281
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)