Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f21
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...   146   7e-36
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   2e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    33   0.076
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical ...    29   2.1  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   3.8  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine rece...    27   6.6  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical...    27   8.7  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score =  146 bits (354), Expect = 7e-36
 Identities = 67/101 (66%), Positives = 82/101 (81%), Gaps = 1/101 (0%)
 Frame = -2

Query: 384 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 205
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++  G
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65

Query: 204 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRK 85
           GGKS GFAL+YDT+D AKKFEPK+RL R GL  K ++P RK
Sbjct: 66  GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRK 106



 Score = 35.1 bits (77), Expect = 0.025
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = -3

Query: 110 TRRRGPRANQRKERKNRMKKVRGT 39
           T+   P   QRKERKNR KKVRGT
Sbjct: 98  TKVEKPGRKQRKERKNRQKKVRGT 121


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -2

Query: 333 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 235
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 33.5 bits (73), Expect = 0.076
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 189 GFALIYDTLDLAKKFEPKH 133
           GF L+YDT D A K++P+H
Sbjct: 54  GFTLVYDTFDFANKYQPEH 72


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = -2

Query: 285 EIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYE 106
           +IR+++ +MY      V V  F       +     +IYD + LAKK   + +L +  L E
Sbjct: 424 KIRKEIPEMYGFIQTPVTVKTFIVQMEEERRKKTKIIYDKVQLAKKKNKEIKLKKKVLEE 483

Query: 105 KKRPTRKPA*RT*EQNEE 52
           +++  +     T E +E+
Sbjct: 484 EEKTEKMMENMTLENSED 501


>AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical
           protein Y51A2A.6 protein.
          Length = 140

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -2

Query: 222 FKTNFGGGKSTGFALI----YDTLDLAKKFEPKHRLARHGLYEKKRPTRKP 82
           F  N GGGK+ GF+        + +  KK    H    HG   + RPTR P
Sbjct: 21  FVKNNGGGKNHGFSSASSSSSSSSEEGKKHGHGHHHHNHGRPSRPRPTRPP 71


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 272 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 412
           FS + V L V GF    +   ICL RA NN++V+ +   I   P+L+L+Y
Sbjct: 22  FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 145  ELLGQIECVVDQSESS*LATSEVCLETEYEHYIGSNLVHFGELLTD 282
            +LL  IE VVD+ + +    S+ C  +E + ++G N+VH    L+D
Sbjct: 1077 DLLSGIERVVDEWKVAECGISDQCNASENQVFVG-NVVHVVSQLSD 1121


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 145  ELLGQIECVVDQSESS*LATSEVCLETEYEHYIGSNLVHFGELLTD 282
            +LL  IE VVD+ + +    S+ C  +E + ++G N+VH    L+D
Sbjct: 1077 DLLSGIERVVDEWKVAECGISDQCNASENQVFVG-NVVHVVSQLSD 1121


>U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein73 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +2

Query: 317 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 412
           KTS   ICL RA NN++V+     ++  PSL+L+Y
Sbjct: 4   KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 322  IANHLLARQQSVGHEFASANSRCSFTHFEL 411
            +A H+ A + S+G+ +     +C+  HF L
Sbjct: 991  VAMHISAEEGSIGNTYPLPQMKCTIDHFTL 1020


>AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical
           protein R07C3.3 protein.
          Length = 470

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 448 QRHVRVDAELLKIIQNE*RNSDY 380
           ++H++ D + LK+ +N+ +NSDY
Sbjct: 260 KKHLKWDLKSLKLFRNDSKNSDY 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,155,436
Number of Sequences: 27780
Number of extensions: 233680
Number of successful extensions: 696
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)