Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f19
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    28   1.5  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    28   1.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.4  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    26   4.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   7.9  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -3

Query: 570 MNMFLQSRWHLFATILNCTFDLLDDAVLM-NYFNYLQSMQLKHLVGSTSTNIFKFVKPQF 394
           +N FLQ  W++F   L+     + D +L  N  +++ SM L      T +    F++   
Sbjct: 224 LNTFLQQFWYIFEPSLSERITEITDQILSENVPSFIDSMALSEFTLGTKSPRMGFIRSY- 282

Query: 393 RFVCNRTTVDILEFDTRMYIKP 328
                +T  D +  D R+   P
Sbjct: 283 ----PKTEEDTVMMDLRLAFSP 300


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 261 AEFGKVFKNKIFVNINNYGCVLAGSAGFLFDDAYVDWNGVRMCAAPRL 118
           A++GK+ K K F+  +  G ++   +G +F     DW        P+L
Sbjct: 59  AKYGKLKKTKKFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKL 106


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 171 DDAYVDWNGVRMCAAPRLD 115
           DDA++DWN +R C+A  LD
Sbjct: 384 DDAFMDWN-LRKCSAAALD 401


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 224 TNILFLNTLPNSAYRKAIILRGLDVN-RFVAYTCV 325
           TNI+  N LP S++ K ++L+ L+ N +FV +  V
Sbjct: 340 TNIIIENILP-SSFSKPVVLKALNGNDKFVCFLTV 373


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = -3

Query: 144 VRMCAAPRLDNNMHP----FRLYLLGEDMAKHFVD--NNILPP 34
           +RMC+A R D  +H       L +L      H V+  N+ILPP
Sbjct: 87  IRMCSAARTDKGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPP 129


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 179 FCSTTRTWIGMVCE 138
           +CS++ TW+G +C+
Sbjct: 156 YCSSSGTWVGKICK 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,478
Number of Sequences: 5004
Number of extensions: 63919
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)