Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f19
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1449 - 27174451-27178005                                         29   2.7  
09_06_0122 + 20990754-20991263,20992635-20992748                       29   3.5  
06_01_0726 + 5319809-5319839,5319918-5319976,5320859-5320927,532...    29   3.5  
07_03_1002 - 23229298-23231471,23235866-23237777                       29   4.7  
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    28   6.2  

>08_02_1449 - 27174451-27178005
          Length = 1184

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 529 SCE*MPSALKEHVHYLLNQNSWSKINI*NDLFPE 630
           S E  P   K H+HYL N   W    + + +FPE
Sbjct: 841 SLEIFPKLKKMHLHYLPNLEKWMDNEVTSVMFPE 874


>09_06_0122 + 20990754-20991263,20992635-20992748
          Length = 207

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = +3

Query: 33  AAVVYYYRQSA*PCPRPVD-------TIGTDACCYLIAAPHTFAHHSNPRTRRRTKNRHC 191
           A+  Y+ +Q   P P P+D         G D C    AAP       + R RR  KNR  
Sbjct: 76  ASASYHQQQHHLPAPAPLDGAILPARRFGLDMCAAAAAAPAGVPAAGDRRKRRMIKNRE- 134

Query: 192 PLTRSRS 212
              RSR+
Sbjct: 135 SAARSRA 141


>06_01_0726 +
           5319809-5319839,5319918-5319976,5320859-5320927,
           5321009-5321071,5321360-5321419
          Length = 93

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 456 QLKHLVGSTST-NIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGTHVYATNLFTSNPRK 280
           Q K +V   ST N  +  + +F+   N   + I++F  R   +    +Y  + F+ NP +
Sbjct: 8   QKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDE 67

Query: 279 MMAFLYAEFG 250
           ++  LY  FG
Sbjct: 68  LIIDLYNNFG 77


>07_03_1002 - 23229298-23231471,23235866-23237777
          Length = 1361

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 333 KPGTHVYATNL-FTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCVLAGSAGFLFD 169
           KP  HV+A  L   +NP         EFG +  N + V++N+   + A +AG+  D
Sbjct: 150 KPSNHVFAVELDIITNP---------EFGDIDSNHVGVDVNSLRSLQAKTAGYYVD 196


>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 429 STNIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGTHVYATNLFTSNPRKMMAFL--YAE 256
           S N+ K VKP   F+  +  +D  +      +    ++Y++ LFTSNP K+   +    E
Sbjct: 660 SANLDKVVKPNLAFL-KQCGIDARD------VASNPNLYSSRLFTSNPMKLRDAVARVEE 712

Query: 255 FGKVFKNKIF 226
            G V  +++F
Sbjct: 713 LGMVRGSRVF 722


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,945,856
Number of Sequences: 37544
Number of extensions: 423167
Number of successful extensions: 1082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)