Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f19
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse t...    25   1.7  
AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse t...    25   1.7  
AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse t...    25   1.7  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   2.3  
AJ439353-7|CAD27929.1|  555|Anopheles gambiae putative glycerol ...    25   3.0  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    23   7.0  

>AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 507 LLDDAVLMNYFNYLQSMQLKHLVG-STSTNIFKFVKPQFRFVCNRTTVDILEFDTRMYIK 331
           L+ + +L +  NY+   Q   +   ST+TN+ +FV    + +  R  VD++  D +    
Sbjct: 18  LVYEPLLASARNYISPNQHGFVPNRSTTTNLMQFVSSCHKSIDARLQVDVIYTDLKAAFD 77

Query: 330 PGTHV 316
             +HV
Sbjct: 78  RISHV 82


>AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 507 LLDDAVLMNYFNYLQSMQLKHLVG-STSTNIFKFVKPQFRFVCNRTTVDILEFDTRMYIK 331
           L+ + +L +  NY+   Q   +   ST+TN+ +FV    + +  R  VD++  D +    
Sbjct: 18  LVYEPLLASARNYISPNQHGFVPNRSTTTNLMQFVSSCHKSIDARLQVDVIYTDLKAAFD 77

Query: 330 PGTHV 316
             +HV
Sbjct: 78  RISHV 82


>AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 507 LLDDAVLMNYFNYLQSMQLKHLVG-STSTNIFKFVKPQFRFVCNRTTVDILEFDTRMYIK 331
           L+ + +L +  NY+   Q   +   ST+TN+ +FV    + +  R  VD++  D +    
Sbjct: 18  LVYEPLLASARNYISPNQHGFVPNRSTTTNLMQFVSSCHKSIDARLQVDVIYTDLKAAFD 77

Query: 330 PGTHV 316
             +HV
Sbjct: 78  RISHV 82


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
 Frame = -3

Query: 468  LQSMQLKHLVGSTSTNIFKFVKPQFRF--------VCNRTTVDILEFDTRMYIKPGTHVY 313
            L+ + + H      T + K + P+F          +C+ +++D+     +   + G+   
Sbjct: 814  LRVLTINHKGNLNDTEVQKSLPPKFLIHTFGNGFLMCSASSIDVWTMGIKNEWQKGSTQA 873

Query: 312  ATNLFTSNPRKMMAF-LYAEFGKVFK 238
             TN+FT   + + AF L AEF    +
Sbjct: 874  PTNIFTDIDKLLNAFVLDAEFSTALR 899


>AJ439353-7|CAD27929.1|  555|Anopheles gambiae putative glycerol
           kinase protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 14  VFALEGCGGSILLSTKCLAMSSPSRYNRNGCMLLSNRGAAHIRT 145
           + A+ G   + L+  +CL         R GC LL N G   +++
Sbjct: 252 ISAILGNQQASLVGQRCLKEGQAKNTYRKGCFLLYNTGTRCVQS 295


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 5   ILRVFALEGCGGSILLSTKCLAMSSP 82
           +L VFA +G  G   L   CL  ++P
Sbjct: 823 VLEVFATDGGNGDQQLQGSCLVNNTP 848


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,638
Number of Sequences: 2352
Number of extensions: 16924
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)