Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f19
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-2|AAA82265.1| 248|Caenorhabditis elegans Hypothetical pr... 32 0.34
Z83123-8|CAB05613.2| 330|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z79600-6|CAB01879.2| 529|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF003142-5|ABQ13067.1| 474|Caenorhabditis elegans Hypothetical ... 30 1.8
AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical ... 30 1.8
AC006748-2|AAF60515.2| 215|Caenorhabditis elegans Hypothetical ... 29 2.4
AL021487-11|CAA16355.2| 330|Caenorhabditis elegans Hypothetical... 29 3.2
Z82068-1|CAB04897.1| 149|Caenorhabditis elegans Hypothetical pr... 29 4.2
U23168-11|AAC38811.2| 454|Caenorhabditis elegans Hypothetical p... 28 7.4
Z81134-3|CAB03446.1| 991|Caenorhabditis elegans Hypothetical pr... 27 9.8
>U41007-2|AAA82265.1| 248|Caenorhabditis elegans Hypothetical
protein C33H5.6 protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 381 NRTTVDILEFDTRMYIKP-GTHVYATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYG 205
N TT+ +L + Y++ H N +NP+ FL + + NYG
Sbjct: 89 NDTTIRLLHLQKKSYVRYFDGHRMPVNFIRTNPKDREKFLSSSVDGEIRMFDTRTFENYG 148
Query: 204 CVLAG 190
C+LAG
Sbjct: 149 CLLAG 153
>Z83123-8|CAB05613.2| 330|Caenorhabditis elegans Hypothetical
protein T04A11.10 protein.
Length = 330
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 332 FMYMRVSNSKMSTVVRLHTNRNCGFTNLKMFVDVLPT 442
F+Y ++ N K+S +LH NRN + N ++ + + T
Sbjct: 225 FLYRKIRNLKVSARCQLHVNRNTNYQNAEVSLTLTAT 261
>Z79600-6|CAB01879.2| 529|Caenorhabditis elegans Hypothetical
protein F59C6.8 protein.
Length = 529
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 564 MFLQSRWHLFATILNCTF--DLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVK 403
+FL RW L + TF +L D ++ Y +Y M V S T++FK +K
Sbjct: 172 LFLNERWQLLLATVEVTFHQELHDHSIFQIYSHYGAFMHF--YVRSIITDLFKLIK 225
>AF003142-5|ABQ13067.1| 474|Caenorhabditis elegans Hypothetical
protein F57C9.4c protein.
Length = 474
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 463 KHAVETFGGQHVDKHFQVCKATISICVQSHNCG-HFRI 353
K E F +HVDK + C+A S Q HN G H+R+
Sbjct: 350 KQMEEHFLNKHVDKEKKKCEACPSDQFQPHNIGQHYRL 387
>AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical
protein F57C9.4b protein.
Length = 856
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 463 KHAVETFGGQHVDKHFQVCKATISICVQSHNCG-HFRI 353
K E F +HVDK + C+A S Q HN G H+R+
Sbjct: 732 KQMEEHFLNKHVDKEKKKCEACPSDQFQPHNIGQHYRL 769
>AC006748-2|AAF60515.2| 215|Caenorhabditis elegans Hypothetical
protein Y39A3B.3 protein.
Length = 215
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 670 STQRK-MSGGGNLLTLERDHFKYLFLTSY 587
ST+RK + GGN + D+FKYL ++Y
Sbjct: 110 STERKSLKNGGNTTVILYDNFKYLIFSNY 138
>AL021487-11|CAA16355.2| 330|Caenorhabditis elegans Hypothetical
protein Y45F10B.4 protein.
Length = 330
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 332 FMYMRVSNSKMSTVVRLHTNRNCGFTNLKMFVDVLPT 442
F+Y ++ N K+S +LH NRN + ++ + + T
Sbjct: 225 FLYRKIRNLKVSARCQLHVNRNTNYQKAEVSLTLTAT 261
>Z82068-1|CAB04897.1| 149|Caenorhabditis elegans Hypothetical
protein W04A4.3 protein.
Length = 149
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 275 WLSCTLNLARCLRIKYSXXXXXTAAC*RAVPVFCSTTRTWIGMVCECVRRRD 120
WL C LN +C KYS AV + C + W G +C++ R+
Sbjct: 97 WLECQLNKLQCCTKKYSRNVTDFEIL--AV-LECIQGKQWFGKALDCLQPRN 145
>U23168-11|AAC38811.2| 454|Caenorhabditis elegans Hypothetical
protein B0228.8 protein.
Length = 454
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 339 YIKPGTHVYATNLFTSNPRKMMAFLYAEFGKV--FKNKIFVNINNYG 205
YI P T V+ ++ N + + + Y FGKV + +F +I+N G
Sbjct: 234 YITPATKVFICDVGKMNGNQFVEYWYKRFGKVQTYSEHVF-DISNNG 279
>Z81134-3|CAB03446.1| 991|Caenorhabditis elegans Hypothetical
protein T28D6.4 protein.
Length = 991
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 484 ELFQLLAKHAVETFGGQHVDKHFQVCKAT-ISICVQSHNCGH 362
E FQ +E G +H K + K + +S CV SH C H
Sbjct: 28 EWFQQANSRRLEIIGKEHSGKTWFARKLSEVSECVASHFCSH 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,066,495
Number of Sequences: 27780
Number of extensions: 380916
Number of successful extensions: 884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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