Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f18
         (386 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2IA84 Cluster: Putative secreted salivary protein; n=1...    75   4e-13
UniRef50_Q9W3N7 Cluster: CG18624-PA, isoform A; n=5; Diptera|Rep...    57   1e-07
UniRef50_Q4S729 Cluster: Chromosome 14 SCAF14723, whole genome s...    41   0.010
UniRef50_UPI0000E49973 Cluster: PREDICTED: similar to NADH dehyd...    34   0.83 
UniRef50_A7T7D5 Cluster: Predicted protein; n=1; Nematostella ve...    34   0.83 
UniRef50_O75438 Cluster: NADH dehydrogenase [ubiquinone] 1 beta ...    34   1.1  
UniRef50_A2FXE5 Cluster: Putative uncharacterized protein; n=1; ...    33   1.4  
UniRef50_Q0JIZ5 Cluster: Os01g0769000 protein; n=8; Oryza sativa...    33   1.9  
UniRef50_Q59167 Cluster: Cellulose synthase 2 [Includes: Cellulo...    33   1.9  
UniRef50_A6C605 Cluster: Putative uncharacterized protein; n=1; ...    32   3.3  
UniRef50_Q02378 Cluster: NADH dehydrogenase [ubiquinone] 1 beta ...    31   5.8  
UniRef50_A6C5G3 Cluster: Putative uncharacterized protein; n=1; ...    31   7.7  
UniRef50_Q0CCE7 Cluster: Predicted protein; n=1; Aspergillus ter...    31   7.7  

>UniRef50_A2IA84 Cluster: Putative secreted salivary protein; n=1;
           Xenopsylla cheopis|Rep: Putative secreted salivary
           protein - Xenopsylla cheopis (oriental rat flea)
          Length = 59

 Score = 75.4 bits (177), Expect = 4e-13
 Identities = 31/47 (65%), Positives = 37/47 (78%)
 Frame = -3

Query: 159 PRFIWFGVPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRVKEGDPP 19
           P+ +W  +P+ GF++GK LDD ET RMT FRDKSALFGG VK GDPP
Sbjct: 10  PQLLWMLLPLAGFYLGKMLDDSETNRMTLFRDKSALFGGNVKPGDPP 56


>UniRef50_Q9W3N7 Cluster: CG18624-PA, isoform A; n=5; Diptera|Rep:
           CG18624-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 56

 Score = 56.8 bits (131), Expect = 1e-07
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -3

Query: 174 IFGITPRFIWFGVPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRV-KEGDPP 19
           + G+  R +W  +P+ GF IG FLD +ET RMT FRDKSAL+G     EG  P
Sbjct: 2   VLGLDKRALWGALPLLGFAIGHFLDKKETERMTMFRDKSALYGRPAGSEGKAP 54


>UniRef50_Q4S729 Cluster: Chromosome 14 SCAF14723, whole genome
           shotgun sequence; n=7; Euteleostomi|Rep: Chromosome 14
           SCAF14723, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 58

 Score = 40.7 bits (91), Expect = 0.010
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = -3

Query: 138 VPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRVKEGD 25
           VPM GF IG +LD Q+  ++T+FR+KSAL+   +K G+
Sbjct: 17  VPM-GFVIGWYLDRQQDKKLTAFRNKSALYSRELKPGE 53


>UniRef50_UPI0000E49973 Cluster: PREDICTED: similar to NADH
           dehydrogenase; n=2; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to NADH dehydrogenase -
           Strongylocentrotus purpuratus
          Length = 60

 Score = 34.3 bits (75), Expect = 0.83
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = -3

Query: 174 IFGITPRFIWFGVPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRVKEGDPP 19
           +  +   + W  +      +G +LD Q+T+R + +++K+ L+   +K+G+ P
Sbjct: 2   VMQVLRNYWWAAITPAFALVGYYLDAQQTVRYSGWKNKTELYKRELKQGEDP 53


>UniRef50_A7T7D5 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 422

 Score = 34.3 bits (75), Expect = 0.83
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 8   WARXG-GSPSLTLPPNKADLSRKLVILKVSWSSRNLPMKNPVIGTPNQMKRGVMPKMAIL 184
           W   G G+ S+   PN+ D  R   +LK++  + N  +K P     N +   +  ++++L
Sbjct: 77  WTAGGYGNYSIVELPNECDAVRITFLLKITSETYNSKLKEPKSPEFNALASNIKKQISLL 136

Query: 185 YFDLLSFPLASV 220
           Y D  S+ +  V
Sbjct: 137 YADKQSYSILQV 148


>UniRef50_O75438 Cluster: NADH dehydrogenase [ubiquinone] 1 beta
           subcomplex subunit 1; n=7; Eutheria|Rep: NADH
           dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 -
           Homo sapiens (Human)
          Length = 58

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = -3

Query: 138 VPMTGFFIGKFLDDQETLRMTSFRDKSALF 49
           VPM GF IG +LD +   R+T+FR+KS LF
Sbjct: 17  VPM-GFVIGCYLDRKSDERLTAFRNKSMLF 45


>UniRef50_A2FXE5 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1002

 Score = 33.5 bits (73), Expect = 1.4
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +2

Query: 116 MKNPVIGTPNQMKRGVMPKMAIL----YFDLLSFPLASVVPVKKNKRNAYGGKDYAHK 277
           +KN + G  N +KRG++P M  L    Y DL   PL ++ P+ +NK    GG D AH+
Sbjct: 301 IKNTINGIIN-IKRGLIPPMNDLGSYSYHDLFIAPLYALAPLYENK----GGADAAHR 353


>UniRef50_Q0JIZ5 Cluster: Os01g0769000 protein; n=8; Oryza
           sativa|Rep: Os01g0769000 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 833

 Score = 33.1 bits (72), Expect = 1.9
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
 Frame = +2

Query: 23  GSPSLTLPPNK---ADLSRKLVIL-KVSWSSRNLPMKNPVIGT-PNQM------KRGVMP 169
           GSPS++LP +    A LS  L     VS+ S NLP  NP+    PNQ       +  ++P
Sbjct: 224 GSPSMSLPSSSYHMAGLSHGLPYGGSVSFGSPNLPGSNPIQNDWPNQANPYAVDQFNLLP 283

Query: 170 KMAILYFDLLSFPLASVVPVKKNKRNAYGGKDYAHK----IPTQEL*QRHKPVYTNR 328
            M      L + P++S++  ++ +R A      +H+    +P     Q H P  T R
Sbjct: 284 NMLQKQISLPNSPMSSLLFSQQQQRLAQVQVQPSHQNYLNLPPHLFYQHHSPELTGR 340


>UniRef50_Q59167 Cluster: Cellulose synthase 2 [Includes: Cellulose
            synthase catalytic subunit [UDP-forming] (EC 2.4.1.12);
            Cyclic di-GMP-binding domain (Cellulose synthase 2
            regulatory domain)]; n=1; Gluconacetobacter xylinus|Rep:
            Cellulose synthase 2 [Includes: Cellulose synthase
            catalytic subunit [UDP-forming] (EC 2.4.1.12); Cyclic
            di-GMP-binding domain (Cellulose synthase 2 regulatory
            domain)] - Acetobacter xylinus (Gluconacetobacter
            xylinus)
          Length = 1596

 Score = 33.1 bits (72), Expect = 1.9
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
 Frame = +2

Query: 5    LWARXGGSPSLTLPPNKADLSRKLVILKVSWSSRNL--PMKNPVIGTPNQMKRGVMPKMA 178
            LWAR     ++TL   +    RKL  L   +   NL  P++ PV+  PN    G++   A
Sbjct: 999  LWARISDFSTVTLTTTRIAPDRKLSYLPAPFYDPNLRTPLRVPVV-MPNPDAHGMLKASA 1057

Query: 179  ILY--------FDLLSFPLASVVPVKKN 238
            ++         F  +SFP+++ +P   N
Sbjct: 1058 LVASWFGKLADFRKVSFPVSTTIPASGN 1085


>UniRef50_A6C605 Cluster: Putative uncharacterized protein; n=1;
            Planctomyces maris DSM 8797|Rep: Putative uncharacterized
            protein - Planctomyces maris DSM 8797
          Length = 1111

 Score = 32.3 bits (70), Expect = 3.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 113  PMKNPVIGTPNQMKRGVMPKMAILYFDLLSFPLASVVPVKKNKRNAYG 256
            P+K   +  P+ +KRG    + I   D    P+A+V+PV+ +  +A G
Sbjct: 990  PIKRVAVDVPSALKRGEAGTVTIQVLDEQGAPVAAVIPVEVSIEDAEG 1037


>UniRef50_Q02378 Cluster: NADH dehydrogenase [ubiquinone] 1 beta
           subcomplex subunit 1; n=5; Theria|Rep: NADH
           dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 -
           Bos taurus (Bovine)
          Length = 57

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -3

Query: 138 VPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRVKEGD 25
           VPM GF  G +LD +   ++T+FR+KS L+   +K  +
Sbjct: 16  VPM-GFVFGYYLDRKNDEKLTAFRNKSLLYKRELKPNE 52


>UniRef50_A6C5G3 Cluster: Putative uncharacterized protein; n=1;
           Planctomyces maris DSM 8797|Rep: Putative
           uncharacterized protein - Planctomyces maris DSM 8797
          Length = 1337

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 205 KAQQIKV*NGHLRHHSSLHLVWCSDDRVLHRQIS 104
           +A+Q +   GH+RH+ +LHL      +V HRQ+S
Sbjct: 352 EAKQSQQPFGHIRHYLNLHLARYGAQQVQHRQLS 385


>UniRef50_Q0CCE7 Cluster: Predicted protein; n=1; Aspergillus
           terreus NIH2624|Rep: Predicted protein - Aspergillus
           terreus (strain NIH 2624)
          Length = 558

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 266 SLSHHKHYAYFS*LEPHSQVESSTDQSIKWPS 171
           +LS+H HYA+F  + P   V  STD ++  P+
Sbjct: 22  TLSYHPHYAWFFGVLPPGSVHGSTDSTLDPPA 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,866,286
Number of Sequences: 1657284
Number of extensions: 8435083
Number of successful extensions: 19409
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19405
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15718494179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)