Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f18
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 5.5
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 25 5.5
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 24 7.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 24 7.2
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 24 7.2
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 24 7.2
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 24 7.2
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 24 9.6
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 9.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 9.6
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 144 FGVPMTGFFIGKFLDDQETLRMTSFRD 64
F VP++ + +LDD+ R FRD
Sbjct: 303 FNVPLSERIVECYLDDENRWRFLRFRD 329
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 5.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 59 DLSRKLVILKVSWSSRNLPMKNPVIGTPNQMKRGVMP 169
D+ R ILK SR + P I P Q K G+MP
Sbjct: 136 DMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMP 172
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 209 VESSTDQSIKWPSSASLLASFGLVFR*QGSS 117
+ESS+ PS++ LL SF F GSS
Sbjct: 327 IESSSSPLRSGPSTSGLLDSFTSAFHTSGSS 357
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 24.2 bits (50), Expect = 7.2
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Frame = -1
Query: 368 PIDFSSFVILNKYLG*YIPVYGVVTVPASESCEHSLSHH----KHYAYFS*LEPHSQVES 201
P DF S I +YL + P+Y ++ + H +H FS E
Sbjct: 249 PEDFDSLRIFARYLVGFAPLYRTDDEKVIKTLNVTRLPHLVAIRHGVAFSYSERSVSAMR 308
Query: 200 STDQSIKWPS 171
+T Q IKW S
Sbjct: 309 NTFQLIKWAS 318
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 24.2 bits (50), Expect = 7.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 338 NKYLG*YI-PVYGVVTVPASESCEHSLSHHKHYAYFS*LEPHS 213
NK + YI PV +S E + + ++YAYFS E HS
Sbjct: 293 NKKIFQYIEPVEHENDAVIEDSAEKTAALARYYAYFSEWEQHS 335
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 164 MPKMAILYFDLLSFPLASVVPVKKNKRNAYG 256
+ K+AI +FD +A +PVKK K +A G
Sbjct: 25 LSKLAISFFDQKKNKMADSIPVKK-KGSAKG 54
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 209 LASVVPVKKNKRNAYGGKDYAHKIP 283
L ++P ++ YGG + A K+P
Sbjct: 636 LEGIIPALESSHAVYGGMELAKKLP 660
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -1
Query: 386 DTIARLPIDFSSFVILNKYLG*YIPVYGVVTVP 288
D A I + I N Y G Y+P+ + +P
Sbjct: 51 DQFAETAIQMLEYFIQNNYTGPYLPIKPEIWLP 83
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 77 VILKVSWSSRNL--PMKNPVIGTPNQMKRGVMPKMAILYFDLLSFP 208
+I + +W + + P+ ++ N V + +L FD+ FP
Sbjct: 117 LIRRANWEKKEIGEPLFEAIMACINSRSIAVSEEATVLLFDMADFP 162
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 NQMKRGVMPKMAILYFDLL-SFPLASVVPVKKNKRNAY 253
NQ++R + ++L+F LL +F VVP+ +++ +Y
Sbjct: 1759 NQLRRRTFYRYSLLFFALLCTFVAMIVVPLVLDQKLSY 1796
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,687
Number of Sequences: 5004
Number of extensions: 37089
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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