Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f18
         (386 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1074|AAN09217.1|   56|Drosophila melanogaster CG18624-P...    57   9e-09
AE014298-1073|AAF46285.1|   56|Drosophila melanogaster CG18624-P...    57   9e-09
AE014298-1698|AAF48101.1| 1013|Drosophila melanogaster CG15740-P...    27   6.4  
BT023620-1|AAY85020.1|  135|Drosophila melanogaster IP05921p pro...    27   8.5  

>AE014298-1074|AAN09217.1|   56|Drosophila melanogaster CG18624-PB,
           isoform B protein.
          Length = 56

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -3

Query: 174 IFGITPRFIWFGVPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRV-KEGDPP 19
           + G+  R +W  +P+ GF IG FLD +ET RMT FRDKSAL+G     EG  P
Sbjct: 2   VLGLDKRALWGALPLLGFAIGHFLDKKETERMTMFRDKSALYGRPAGSEGKAP 54


>AE014298-1073|AAF46285.1|   56|Drosophila melanogaster CG18624-PA,
           isoform A protein.
          Length = 56

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -3

Query: 174 IFGITPRFIWFGVPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRV-KEGDPP 19
           + G+  R +W  +P+ GF IG FLD +ET RMT FRDKSAL+G     EG  P
Sbjct: 2   VLGLDKRALWGALPLLGFAIGHFLDKKETERMTMFRDKSALYGRPAGSEGKAP 54


>AE014298-1698|AAF48101.1| 1013|Drosophila melanogaster CG15740-PA
           protein.
          Length = 1013

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 320 YIPVYGVVTVPASESCEHSLSHHKH 246
           Y P Y    VP  +  +H L HH H
Sbjct: 822 YAPAYVSNAVPRQQQAQHHLHHHYH 846


>BT023620-1|AAY85020.1|  135|Drosophila melanogaster IP05921p
           protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 VGKTMLTRFRRRNCDNAINRYIL 323
           V +T+L+ FRR N D  I ++IL
Sbjct: 3   VSRTVLSMFRRTNADPVIRQFIL 25


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,845,150
Number of Sequences: 53049
Number of extensions: 402385
Number of successful extensions: 969
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1066083345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)