Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f18
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    27   4.6  
AL032652-9|CAB76748.1|  267|Caenorhabditis elegans Hypothetical ...    27   4.6  
AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    26   8.1  

>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -3

Query: 201 LNRSKYKMAIFGITPRFIWFGVPMTGFFIGKFLDDQETLRMTSFRDKSALFG 46
           + + +Y + IF I    + FG+ + G + G  L     L +T  R  + +FG
Sbjct: 249 VEKEEYLVVIFFIVVTIVLFGLIVHGMYTGSLLRTVFNLVITYLRIIAGIFG 300


>AL032652-9|CAB76748.1|  267|Caenorhabditis elegans Hypothetical
           protein Y63D3A.11 protein.
          Length = 267

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 125 PVIGTPNQMKRGVMPKMAILYFDLLSFPLASVVPVK 232
           P++  P++  R  +      Y DLLSF L S  PVK
Sbjct: 7   PILRLPSKALRTTLQNFE--YLDLLSFSLVSPTPVK 40


>AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical
           protein ZC328.2 protein.
          Length = 386

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 215 SVVPVKKNKRNAYGGKDYAHKIPTQEL*QRHK 310
           S++   +N R      DY HK+  QEL QRH+
Sbjct: 333 SILGTHRNVRRCLSDGDY-HKMAAQELRQRHQ 363


>Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical
           protein F15A4.7 protein.
          Length = 320

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 331 TSVSIYRFMALSQFLRRNLVSIVFPTISITLIFL 230
           TSV+ Y+   LS  +R    S+ F +ISI+  FL
Sbjct: 214 TSVTFYKLACLSDRVRSIERSLCFTSISISCTFL 247


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 311 VYGVVTVPASESCEHSLSHHKH-YAYFS*LEPHSQVESSTDQSIKWPSSAS 162
           ++GV      + C   +S + + Y   S L+ H  V+  +DQ ++W  S+S
Sbjct: 69  LFGVFDGHGGQQCSRHISTNLYPYLCASVLKKHEVVDYPSDQRLEWLFSSS 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,697,130
Number of Sequences: 27780
Number of extensions: 206492
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)